C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4A, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117271 Atg4a-ps-001 ENSMUSG00000087119 10090 - 3:103644839-103646023 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117271
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117271 0.288±0.00 0.238±0.07 0.303±0.19 0.044±0.02 0.215±0.09 0.190±0.16 0.580±0.03 0.141±0.03 0.985±0.00 0.036±0.00 0.150±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X0 CIL_0006X0_0002 CGP 3:103575231-103738001

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343524 ATG4A-004 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000345734 ATG4A-002 protein_coding Homo_sapiens 0 765
ENST00000372232 ATG4A-001 protein_coding Homo_sapiens 0 1480
ENST00000372246 ATG4A-003 nonsense_mediated_decay Homo_sapiens 0 1362
ENST00000394892 ATG4A-005 protein_coding Homo_sapiens 0 983
ENST00000416893 ATG4AP1-001 processed_pseudogene Homo_sapiens 3e-31 139
ENST00000457035 ATG4A-006 protein_coding Homo_sapiens 0 996
ENST00000489247 ATG4A-008 processed_transcript Homo_sapiens 0 494

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