C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4A, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372246 ATG4A-003 ENSG00000101844 9606 + X:108091784-108154671 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000372246
Transcript ID Adipose Adrenal Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000372246 0.576±0.00 0.606±0.00 0.417±0.20 0.262±0.00 0.595±0.04 1.068±0.00 0.850±0.53 0.508±0.20 0.414±0.00 0.624±0.14 2.175±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JI CIL_0006JI_0001 CGP X:108084207-108154671
CIL_0006JL CIL_0006JL_0001 CGP X:108091668-108439497

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112971 Atg4a-001 protein_coding Mus_musculus 0 1600
ENSMUST00000117271 Atg4a-ps-001 processed_pseudogene Mus_musculus 0 1362
ENSMUST00000118563 Syt6-004 protein_coding Mus_musculus 0 558
ENSMUST00000147972 Atg4a-003 retained_intron Mus_musculus 0 300

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