C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4A, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372232 ATG4A-001 ENSG00000101844 9606 + X:108091668-108154671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372232
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372232 1.076±0.00 0.334±0.00 2.739±0.84 1.680±0.69 1.724±1.00 3.670±2.96 4.440±0.00 3.159±0.00 1.355±0.00 1.485±0.82 2.341±0.38 0.732±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JI CIL_0006JI_0001 CGP X:108084207-108154671
CIL_0006JL CIL_0006JL_0001 CGP X:108091668-108439497

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0006508 IDA proteolysis
GO:0006914 IEA autophagy
GO:0008234 IDA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112971 Atg4a-001 protein_coding Mus_musculus 0 1810
ENSMUST00000117271 Atg4a-ps-001 processed_pseudogene Mus_musculus 0 1480
ENSMUST00000118563 Syt6-004 protein_coding Mus_musculus 0 558
ENSMUST00000147972 Atg4a-003 retained_intron Mus_musculus 0 300

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