C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4A, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343524 ATG4A-004 ENSG00000101844 9606 + X:108091810-108154671 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartLungMusclePlacentaTestisENST00000343524
Transcript ID Adrenal Colon Heart Lung Muscle Placenta Testis
ENST00000343524 1.532±0.00 0.664±0.00 1.233±0.00 1.495±0.00 0.626±0.00 0.465±0.00 1.493±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JI CIL_0006JI_0001 CGP X:108084207-108154671
CIL_0006JL CIL_0006JL_0001 CGP X:108091668-108439497

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 IEA autophagy
GO:0008234 IEA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112971 Atg4a-001 protein_coding Mus_musculus 0 708
ENSMUST00000117271 Atg4a-ps-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000147972 Atg4a-003 retained_intron Mus_musculus 0 300
ENSMUST00000118563 Syt6-004 protein_coding Mus_musculus 1e-34 152

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