C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15198
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117283 Gm15198-001 ENSMUSG00000083429 10090 + 10:42435880-42436065 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverOvaryPlacentaENSMUST00000117283
Transcript ID Adipose Breast Colon Kidney Liver Ovary Placenta
ENSMUST00000117283 14.499±0.82 9.014±0.00 4.601±0.00 2.159±0.00 1.063±0.42 2.040±0.00 8.042±6.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YH CIL_0008YH_0002 VISTA 10:41950904-42552282
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321153 RPLP2-001 protein_coding Homo_sapiens 0 233
ENST00000460082 CTB-47B8.1-001 processed_pseudogene Homo_sapiens 1e-31 139
ENST00000474540 RP11-832N8.1-001 processed_pseudogene Homo_sapiens 0 195
ENST00000525722 RPLP2-005 retained_intron Homo_sapiens 0 233
ENST00000526222 RPLP2-008 processed_transcript Homo_sapiens 0 233
ENST00000527517 RPLP2-007 retained_intron Homo_sapiens 0 235
ENST00000530398 RPLP2-009 protein_coding Homo_sapiens 0 233
ENST00000530797 RPLP2-002 protein_coding Homo_sapiens 0 233
ENST00000532004 RPLP2-004 processed_transcript Homo_sapiens 0 233

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