C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117411 Ssbp1-004 ENSMUSG00000029911 10090 + 6:40471475-40480992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117411 4.030±0.77 15.922±5.12 6.539±0.32 7.368±0.04 3.373±1.41 3.398±1.39 4.748±0.78 4.078±0.92 7.908±4.86 3.255±0.55 12.664±1.07 11.056±7.07 15.283±11.23 4.053±5.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A1 CIL_0003A1_0002 CGP 6:40442863-40481823
CIL_0003A0 CIL_0003A0_0002 CGP 6:40471352-40492239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0005739 IDA mitochondrion
GO:0006260 IEA DNA replication
GO:0070584 IMP mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265304 SSBP1-001 protein_coding Homo_sapiens 0 673
ENST00000404655 RP1-91J24.1-001 processed_pseudogene Homo_sapiens 2e-27 126
ENST00000445848 RP4-654C18.1-001 processed_pseudogene Homo_sapiens 0 340
ENST00000463093 SSBP1-008 protein_coding Homo_sapiens 0 499
ENST00000465167 SSBP1-013 processed_transcript Homo_sapiens 0 523
ENST00000465582 SSBP1-014 protein_coding Homo_sapiens 0 638
ENST00000467681 SSBP1-007 protein_coding Homo_sapiens 0 568
ENST00000469123 SSBP1-012 processed_transcript Homo_sapiens 0 606
ENST00000481508 SSBP1-006 protein_coding Homo_sapiens 0 673
ENST00000484178 SSBP1-010 protein_coding Homo_sapiens 0 673
ENST00000489378 SSBP1-003 retained_intron Homo_sapiens 0 562
ENST00000498107 SSBP1-005 protein_coding Homo_sapiens 0 616
ENST00000570667 SSBP1-001 protein_coding Homo_sapiens 0 560
ENST00000571430 SSBP1-005 protein_coding Homo_sapiens 0 560
ENST00000571709 SSBP1-008 protein_coding Homo_sapiens 0 499
ENST00000572755 SSBP1-013 processed_transcript Homo_sapiens 0 488
ENST00000574068 SSBP1-012 processed_transcript Homo_sapiens 0 494
ENST00000574199 SSBP1-010 protein_coding Homo_sapiens 0 560
ENST00000575059 SSBP1-014 protein_coding Homo_sapiens 0 560
ENST00000575352 SSBP1-003 retained_intron Homo_sapiens 0 562
ENST00000576311 SSBP1-007 protein_coding Homo_sapiens 0 560
ENST00000576834 SSBP1-006 protein_coding Homo_sapiens 0 560
ENST00000612337 SSBP1-201 protein_coding Homo_sapiens 0 673

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