C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15779
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117470 Gm15779-001 ENSMUSG00000082633 10090 + 6:149003915-149004326 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117470
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117470 0.308±0.16 0.110±0.04 0.512±0.17 0.481±0.27 0.237±0.17 0.500±0.31 0.489±0.31 0.507±0.05 0.300±0.18 0.694±0.49 0.250±0.09 0.194±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DK CIL_0003DK_0003 CGP 6:148921035-149101680

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253788 RPL27-001 protein_coding Homo_sapiens 0 449
ENST00000411843 AC096664.1-001 processed_pseudogene Homo_sapiens 0 403
ENST00000427253 AC009362.2-001 processed_pseudogene Homo_sapiens 0 375
ENST00000441321 AC016691.2-001 processed_pseudogene Homo_sapiens 0 307
ENST00000468034 RP11-829H16.2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000477507 CTD-2186M15.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000586277 RPL27-006 protein_coding Homo_sapiens 0 361
ENST00000588830 RPL27-007 nonsense_mediated_decay Homo_sapiens 7.9874e-44 180
ENST00000589037 RPL27-004 protein_coding Homo_sapiens 0 449
ENST00000589913 RPL27-003 protein_coding Homo_sapiens 0 449
ENST00000590864 RPL27-008 protein_coding Homo_sapiens 0 359
ENST00000593262 RPL27-002 retained_intron Homo_sapiens 0 359

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