C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117598 Vps8-011 ENSMUSG00000033653 10090 + 16:21423201-21644672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117598
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117598 2.132±0.24 2.152±0.43 3.239±0.48 3.555±0.91 2.499±0.46 2.267±0.54 2.814±0.55 3.165±0.68 1.288±0.53 3.179±0.67 0.780±0.33 3.820±1.27 5.202±2.05 2.000±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0003 CGP 16:21423118-21694665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287546 VPS8-201 protein_coding Homo_sapiens 0 4545
ENST00000422105 VPS8-010 protein_coding Homo_sapiens 0 630
ENST00000424463 VPS8-004 protein_coding Homo_sapiens 0 483
ENST00000426319 VPS8-005 protein_coding Homo_sapiens 0.00000002 62
ENST00000436792 VPS8-002 protein_coding Homo_sapiens 0 4573
ENST00000446204 VPS8-003 protein_coding Homo_sapiens 0 2342
ENST00000452140 VPS8-007 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000452666 VPS8-013 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000458721 VPS8-020 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000463687 VPS8-022 processed_transcript Homo_sapiens 0 608
ENST00000465818 VPS8-016 retained_intron Homo_sapiens 0 671
ENST00000469479 VPS8-014 retained_intron Homo_sapiens 0 486
ENST00000469713 VPS8-017 retained_intron Homo_sapiens 0 268
ENST00000488255 VPS8-023 retained_intron Homo_sapiens 0 442
ENST00000492449 VPS8-006 retained_intron Homo_sapiens 0 2647

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