C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S11, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117608 Rps11-ps3-001 ENSMUSG00000081715 10090 + 4:10946608-10947093 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverOvaryPlacentaENSMUST00000117608
Transcript ID Bladder Brain Breast Colon Heart Liver Ovary Placenta
ENSMUST00000117608 0.023±0.00 0.095±0.00 0.133±0.00 0.203±0.00 0.087±0.00 0.022±0.00 0.315±0.00 0.052±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075028 rps11-001 protein_coding Danio_rerio 0 259
ENSDART00000134524 rps11-002 processed_transcript Danio_rerio 0 243
ENST00000270625 RPS11-001 protein_coding Homo_sapiens 0 468
ENST00000442125 RPS11P7-001 processed_pseudogene Homo_sapiens 0 294
ENST00000594493 RPS11-003 protein_coding Homo_sapiens 0 444
ENST00000596873 RPS11-006 protein_coding Homo_sapiens 0 390
ENST00000599167 RPS11-004 retained_intron Homo_sapiens 4e-17 94
ENST00000600027 RPS11-005 retained_intron Homo_sapiens 0 261
ENST00000601216 RPS11-007 retained_intron Homo_sapiens 0 222
ENST00000601306 RPS11-009 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000602252 RPS11-002 retained_intron Homo_sapiens 0 300

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