C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000075028 rps11-001 ENSDARG00000053058 7955 + 3:37782011-37784026 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000075028
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000075028 138.199±141.57 943.159±666.88 604.683±817.09 503.224±0.00 516.527±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062226 Rps11-ps4-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000117608 Rps11-ps3-001 processed_pseudogene Mus_musculus 0 259
ENST00000270625 RPS11-001 protein_coding Homo_sapiens 0 414
ENST00000442125 RPS11P7-001 processed_pseudogene Homo_sapiens 0 220
ENST00000594493 RPS11-003 protein_coding Homo_sapiens 0 388
ENST00000596873 RPS11-006 protein_coding Homo_sapiens 0 307
ENST00000599167 RPS11-004 retained_intron Homo_sapiens 0 263
ENST00000599561 RPS11-008 protein_coding Homo_sapiens 0 274
ENST00000600027 RPS11-005 retained_intron Homo_sapiens 0 263
ENST00000601216 RPS11-007 retained_intron Homo_sapiens 0 239
ENST00000601306 RPS11-009 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000602252 RPS11-002 retained_intron Homo_sapiens 0 346

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