C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118138 Vps8-004 ENSMUSG00000033653 10090 + 16:21508633-21644675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverOvaryENSMUST00000118138
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Ovary
ENSMUST00000118138 3.742±1.25 1.464±0.00 4.102±0.00 1.885±0.22 1.227±0.00 3.392±0.58 0.590±0.11 3.187±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0003 CGP 16:21423118-21694665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287546 VPS8-201 protein_coding Homo_sapiens 0 2198
ENST00000436792 VPS8-002 protein_coding Homo_sapiens 0 2198
ENST00000446204 VPS8-003 protein_coding Homo_sapiens 0 2198
ENST00000452140 VPS8-007 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000458721 VPS8-020 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000463687 VPS8-022 processed_transcript Homo_sapiens 0 608
ENST00000488255 VPS8-023 retained_intron Homo_sapiens 0 442
ENST00000492449 VPS8-006 retained_intron Homo_sapiens 0 2198

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