C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-adenosylmethionine decarboxylase, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118392 Amd-ps4-001 ENSMUSG00000019836 10090 - 4:51253025-51254027 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverMusclePlacentaENSMUST00000118392
Transcript ID Bladder Brain Heart Liver Muscle Placenta
ENSMUST00000118392 0.008±0.00 0.306±0.00 0.062±0.00 0.244±0.46 0.185±0.06 0.016±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QK CIL_0001QK_0002 CGP 4:51216678-52488260

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064391 amd1-201 protein_coding Danio_rerio 0 673
ENSDART00000135919 amd1-001 protein_coding Danio_rerio 0 673
ENST00000299540 RP3-420J14.1-001 processed_pseudogene Homo_sapiens 0 579
ENST00000368876 AMD1-002 protein_coding Homo_sapiens 0 1472
ENST00000368877 AMD1-005 protein_coding Homo_sapiens 0 1351
ENST00000368882 AMD1-201 protein_coding Homo_sapiens 0 880
ENST00000368885 AMD1-003 protein_coding Homo_sapiens 0 1611
ENST00000406493 RP3-382I10.3-001 processed_pseudogene Homo_sapiens 0 797
ENST00000412936 AMDP1-001 processed_pseudogene Homo_sapiens 0 1151
ENST00000451850 AMD1-001 nonsense_mediated_decay Homo_sapiens 0 952
ENST00000457220 AMD1P1-001 processed_pseudogene Homo_sapiens 0 904
ENST00000465404 AMD1-004 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000508874 CTD-2210P15.2-001 processed_pseudogene Homo_sapiens 0 1295
ENST00000605729 CTD-2356P16.6-001 processed_pseudogene Homo_sapiens 0 187
ENST00000610605 AMD1-202 protein_coding Homo_sapiens 0 1472
ENST00000612642 AMD1-006 retained_intron Homo_sapiens 0 1127
ENST00000619590 AMD1-007 retained_intron Homo_sapiens 0 638

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