C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 41B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299596 TMEM41B-003 ENSG00000166471 9606 - 11:9280654-9314567 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLungTestisENST00000299596
Transcript ID Adipose Adrenal Breast Colon Lung Testis
ENST00000299596 2.016±0.00 2.601±0.00 1.363±0.00 0.763±0.00 3.126±0.00 3.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HO CIL_0001HO_0002 CGP 11:9138825-9314780
CIL_0001HI CIL_0001HI_0002 CGP 11:9280654-9448126

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118429 Tmem41b-002 protein_coding Mus_musculus 0 1037
ENSMUST00000094097 Tmem41b-001 protein_coding Mus_musculus 0 1037
ENSMUST00000178436 Gm6223-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000119929 Tmem41b-003 protein_coding Mus_musculus 0 1020
ENSMUST00000135565 Tmem41b-006 nonsense_mediated_decay Mus_musculus 0 697
ENSMUST00000151587 Tmem41b-004 retained_intron Mus_musculus 0 381
ENSMUST00000124821 Tmem41b-005 nonsense_mediated_decay Mus_musculus 0 215

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