C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 41B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524543 TMEM41B-002 ENSG00000166471 9606 - 11:9280654-9314636 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000524543
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000524543 0.985±0.00 2.533±0.00 8.345±0.00 1.243±0.00 1.641±0.70 1.444±0.95 3.401±1.61 3.912±0.00 4.781±0.00 0.563±0.03 1.959±0.00 2.292±1.60 1.858±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HO CIL_0001HO_0002 CGP 11:9138825-9314780
CIL_0001HI CIL_0001HI_0002 CGP 11:9280654-9448126

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118429 Tmem41b-002 protein_coding Mus_musculus 0 1026
ENSMUST00000094097 Tmem41b-001 protein_coding Mus_musculus 0 1026
ENSMUST00000178436 Gm6223-001 processed_pseudogene Mus_musculus 0 1000
ENSMUST00000119929 Tmem41b-003 protein_coding Mus_musculus 0 992
ENSMUST00000135565 Tmem41b-006 nonsense_mediated_decay Mus_musculus 0 747
ENSMUST00000151587 Tmem41b-004 retained_intron Mus_musculus 0 396
ENSMUST00000124821 Tmem41b-005 nonsense_mediated_decay Mus_musculus 0 230
ENSMUST00000024742 Nfkbie-201 protein_coding Mus_musculus 0.00002 57
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00007 55

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