C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11870
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119255 Gm11870-001 ENSMUSG00000084408 10090 - 4:16011005-16012326 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119255
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119255 0.325±0.05 0.265±0.07 0.046±0.02 0.218±0.14 0.639±0.25 0.069±0.03 0.104±0.06 0.151±0.06 0.083±0.04 0.388±0.05 0.035±0.01 0.584±0.31 0.186±0.15 0.178±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00015K CIL_00015K_0002 CGP 4:15957925-16013888

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 913
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 915
ENST00000473885 TUBA4B-003 processed_transcript Homo_sapiens 0.00000000000003 84
ENST00000485041 TUBA4B-002 processed_transcript Homo_sapiens 0.000000000000002 88
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 344
ENST00000490341 TUBA4B-001 processed_transcript Homo_sapiens 0 313
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 887
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 292
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 913
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 315
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 353
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 4e-31 139
ENST00000559655 RP11-83J16.3-001 processed_pseudogene Homo_sapiens 0 268

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