C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 4b (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486997 TUBA4B-004 ENSG00000243910 9606 + 2:219269628-219272146 transcribed_unprocessed_pseudogene

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006NV CIL_0006NV_0001 CGP 2:219245455-219278170

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 1445
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 1445
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 1315
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 1286
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 1269
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 1238
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 1208
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 1103
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 942
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 941
ENSDART00000016360 protein_coding Danio_rerio 0 933
ENSDART00000102713 protein_coding Danio_rerio 0 933
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 896
ENSDART00000026292 tuba7l-201 protein_coding Danio_rerio 0 867
ENSMUST00000117877 Gm11873-001 processed_pseudogene Mus_musculus 0 839
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 628
ENSMUST00000120657 Gm12201-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000119255 Gm11870-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 309
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 307
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 257
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 220
ENSMUST00000117636 Gm14892-001 processed_pseudogene Mus_musculus 7e-31 139

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