C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119455 Tmc8-006 ENSMUSG00000050106 10090 + 11:117782658-117793083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonMuscleOvaryPlacentaENSMUST00000119455
Transcript ID Colon Muscle Ovary Placenta
ENSMUST00000119455 9.121±0.00 0.268±0.00 3.192±0.00 3.671±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198
CIL_0000A9 CIL_0000A9_0002 CGP 11:117765988-117793110
CIL_00037M CIL_00037M_0002 CGP 11:117782076-117807301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 IEA regulation of cell growth
GO:0005102 IEA receptor binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane
GO:0031965 IEA nuclear membrane
GO:0032091 IEA negative regulation of protein binding
GO:0032460 IEA negative regulation of protein oligomerization
GO:0055069 IEA zinc ion homeostasis
GO:0070062 IEA extracellular vesicular exosome
GO:1902041 IEA regulation of extrinsic apoptotic signaling pathway via death domain receptors

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318430 TMC8-002 protein_coding Homo_sapiens 0 1866
ENST00000589691 TMC8-003 protein_coding Homo_sapiens 0 1703
ENST00000590184 TMC8-013 processed_transcript Homo_sapiens 0 191
ENST00000591003 TMC8-009 processed_transcript Homo_sapiens 0 294
ENST00000591983 TMC8-008 retained_intron Homo_sapiens 0 327

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