C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6341
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119683 Gm6341-001 ENSMUSG00000083121 10090 - 7:101154645-101155055 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119683
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119683 0.279±0.15 0.884±0.35 0.936±0.15 0.494±0.40 0.754±0.30 0.138±0.00 0.754±0.00 0.475±0.44 0.149±0.00 0.194±0.03 0.331±0.16 0.358±0.03 0.203±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253788 RPL27-001 protein_coding Homo_sapiens 0 521
ENST00000411843 AC096664.1-001 processed_pseudogene Homo_sapiens 0 440
ENST00000425821 RP4-604A21.1-001 processed_pseudogene Homo_sapiens 0 292
ENST00000427253 AC009362.2-001 processed_pseudogene Homo_sapiens 0 442
ENST00000441321 AC016691.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000468034 RP11-829H16.2-001 processed_pseudogene Homo_sapiens 0 409
ENST00000477507 CTD-2186M15.1-001 processed_pseudogene Homo_sapiens 0 414
ENST00000586277 RPL27-006 protein_coding Homo_sapiens 0 416
ENST00000588830 RPL27-007 nonsense_mediated_decay Homo_sapiens 7.9874e-44 180
ENST00000589037 RPL27-004 protein_coding Homo_sapiens 0 521
ENST00000589913 RPL27-003 protein_coding Homo_sapiens 0 521
ENST00000590864 RPL27-008 protein_coding Homo_sapiens 0 414
ENST00000593262 RPL27-002 retained_intron Homo_sapiens 0 414

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