C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15554
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120406 Gm15554-001 ENSMUSG00000081250 10090 - 16:75772159-75773071 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000120406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000120406 0.072±0.00 0.105±0.00 0.040±0.00 0.031±0.00 0.090±0.07 0.095±0.00 0.092±0.07 0.050±0.03 0.135±0.00 0.192±0.13 0.051±0.00 0.108±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MS CIL_0000MS_0003 CGP 16:75755190-76022270

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 337
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 2e-36 158
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 337
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 337
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 337
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 303
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 2.00386e-43 180
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 285
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 348
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 357
ENST00000433816 GAPDHP32-001 processed_pseudogene Homo_sapiens 0 213
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 311
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 233
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 2e-36 158
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 2e-36 158
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 2e-36 158
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 337
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 298
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 315
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 204
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 2.99878e-43 180
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 265
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 329
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 207
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 289

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