C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: parvalbumin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120592 Pvalb-001 ENSMUSG00000005716 10090 - 15:78191117-78206400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120592
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120592 0.095±0.07 0.029±0.01 10.490±14.24 391.689±244.02 0.169±0.07 19.539±8.58 0.011±0.00 2.413±1.64 6344.129±495.11 0.220±0.11 0.026±0.00 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SS CIL_0005SS_0002 CGP 15:78159465-78206400
CIL_0006F3 CIL_0006F3_0003 CGP 15:78191114-78262580

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0030424 IDA axon

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216200 PVALB-001 protein_coding Homo_sapiens 0 604
ENST00000404171 PVALB-004 protein_coding Homo_sapiens 0 429
ENST00000406910 PVALB-005 protein_coding Homo_sapiens 0 363
ENST00000417718 PVALB-002 protein_coding Homo_sapiens 0 593
ENST00000443735 PVALB-006 protein_coding Homo_sapiens 0 387
ENST00000467935 PVALB-003 retained_intron Homo_sapiens 0 387
ENST00000620986 PVALB-201 protein_coding Homo_sapiens 0 592

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