C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ribosomal protein S8, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121011 Rps8-ps3-001 ENSMUSG00000081979 10090 + 6:52118242-52118891 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyMuscleENSMUST00000121011
Transcript ID Breast Kidney Muscle
ENSMUST00000121011 0.119±0.00 0.203±0.09 0.099±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008JP CIL_0008JP_0002 VISTA 6:51557235-52158614
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0003PD CIL_0003PD_0002 CGP 6:51859166-52158317
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000415328 RP11-229A12.2-001 processed_pseudogene Homo_sapiens 0 296
ENST00000426177 RPS8P6-001 processed_pseudogene Homo_sapiens 3e-36 156
ENST00000484005 RP11-252I14.1-001 processed_pseudogene Homo_sapiens 0 207

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