C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121416 Uspl1-006 ENSMUSG00000041264 10090 + 5:149184350-149215428 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000121416
Transcript ID Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121416 3.012±0.09 4.634±0.70 1.436±0.00 0.996±0.19 1.985±0.50 0.580±0.00 4.547±0.82 1.136±0.24 3.147±0.09 4.888±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UA CIL_0007UA_0002 VISTA 5:149020224-149622595
CIL_0004CF CIL_0004CF_0002 CGP 5:149046702-149215434
CIL_0004CN CIL_0004CN_0003 CGP 5:149184350-149288045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006508 IEA proteolysis
GO:0008283 ISS cell proliferation
GO:0015030 ISS Cajal body
GO:0016926 ISS protein desumoylation
GO:0030576 ISS Cajal body organization
GO:0032183 ISS SUMO binding
GO:0070140 ISS SUMO-specific isopeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255304 USPL1-001 protein_coding Homo_sapiens 0 826
ENST00000614860 USPL1-003 protein_coding Homo_sapiens 0 756

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