C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041264 Uspl1 10090 + 5:149184350-149215434 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050472 Uspl1-001 149184560-149215434 protein_coding
  ENSMUST00000100410 Uspl1-003 149184666-149215431 protein_coding
  ENSMUST00000117878 Uspl1-007 149184716-149215433 protein_coding
  ENSMUST00000119685 Uspl1-004 149184667-149215430 protein_coding
  ENSMUST00000121416 Uspl1-006 149184350-149215428 protein_coding
  ENSMUST00000122160 Uspl1-002 149184663-149215430 protein_coding
  ENSMUST00000126168 Uspl1-005 149184678-149215430 nonsense_mediated_decay
  ENSMUST00000139474 Uspl1-009 149184678-149194327 protein_coding
  ENSMUST00000149896 Uspl1-010 149184781-149194094 processed_transcript
  ENSMUST00000150921 Uspl1-008 149191336-149215434 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050472ENSMUST00000100410ENSMUST00000117878ENSMUST00000119685ENSMUST00000121416ENSMUST00000122160ENSMUST00000126168ENSMUST00000139474ENSMUST00000150921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050472 0.925±0.44 1.070±0.37 N/A 1.730±0.00 N/A 1.081±0.11 N/A 0.731±0.00 1.192±0.45 0.893±0.20 1.153±0.00 2.061±0.23 3.392±0.81 1.825±0.00
ENSMUST00000100410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.736±0.09 3.362±0.00
ENSMUST00000117878 1.766±0.00 N/A 2.871±0.22 2.587±0.00 2.962±0.00 1.356±0.03 1.204±0.37 1.795±0.24 1.628±0.75 1.304±0.13 3.159±0.58 2.905±0.98 3.745±1.34 2.704±0.48
ENSMUST00000119685 3.512±1.96 1.839±1.42 N/A 2.028±0.65 3.362±1.02 3.015±0.86 1.253±0.31 1.714±0.84 1.277±0.44 1.622±0.78 N/A 3.086±1.08 2.304±0.60 1.704±0.34
ENSMUST00000121416 N/A N/A 3.012±0.09 4.634±0.70 1.436±0.00 N/A 0.996±0.19 N/A 1.985±0.50 0.580±0.00 4.547±0.82 1.136±0.24 3.147±0.09 4.888±0.64
ENSMUST00000122160 N/A N/A N/A N/A 1.226±0.00 N/A N/A 1.154±0.50 0.753±0.25 0.915±0.05 N/A 1.931±0.69 1.786±0.48 1.405±0.06
ENSMUST00000126168 0.551±0.00 N/A 1.467±0.01 2.847±0.51 2.259±0.80 N/A 1.088±0.53 2.013±0.62 1.457±0.50 0.900±0.00 1.161±0.11 1.603±0.23 N/A 1.763±0.00
ENSMUST00000139474 N/A 3.327±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150921 0.823±0.24 0.715±0.00 N/A N/A 0.539±0.00 0.646±0.22 N/A N/A 0.555±0.00 N/A N/A 1.241±0.57 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UA CIL_0007UA_0002 VISTA 5:149020224-149622595
CIL_0004CF CIL_0004CF_0002 CGP 5:149046702-149215434
CIL_0004CN CIL_0004CN_0003 CGP 5:149184350-149288045

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0006508 IEA proteolysis
GO:0008283 ISS cell proliferation
GO:0015030 ISS Cajal body
GO:0016926 ISS protein desumoylation
GO:0030576 ISS Cajal body organization
GO:0032183 ISS SUMO binding
GO:0070140 ISS SUMO-specific isopeptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034825 uspl1 ubiquitin specific peptidase like 1 protein_coding Danio_rerio
ENSG00000132952 USPL1 ubiquitin specific peptidase like 1 protein_coding Homo_sapiens

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