C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004CN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000034825-ENSDARG00000054755 CGP 7955 10:37683374-37707796
GeneTranscriptPositionBiotype
ENSDARG00000034825 (uspl1)
ubiquitin specific peptidase like 1 		ENSDART00000043802 (uspl1-001) 37683374-37700066 protein_coding
ENSDART00000124060 (uspl1-002) 37683387-37686928 processed_transcript
ENSDARG00000054755 (alox5ap)
arachidonate 5-lipoxygenase-activating protein 		ENSDART00000077008 (alox5ap-001) 37702644-37707796 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004CN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132952-ENSG00000132965 CGP 9606 13:30617693-30764426
GeneTranscriptPositionBiotype
ENSG00000132952 (USPL1)
ubiquitin specific peptidase like 1 		ENST00000255304 (USPL1-001) 30617783-30659549 protein_coding
ENST00000465952 (USPL1-002) 30617693-30631474 processed_transcript
ENST00000614860 (USPL1-003) 30617937-30660770 protein_coding
ENSG00000132965 (ALOX5AP)
arachidonate 5-lipoxygenase-activating protein 		ENST00000380490 (ALOX5AP-001) 30735508-30764426 protein_coding
ENST00000479597 (ALOX5AP-002) 30742336-30744396 processed_transcript
ENST00000617770 (ALOX5AP-201) 30713478-30764425 protein_coding
ENSG00000275788 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000612609 (Metazoa_SRP.1-334) 30684029-30684278 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004CN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041264-ENSMUSG00000060063 CGP 10090 5:149184350-149288045
GeneTranscriptPositionBiotype
ENSMUSG00000041264 (Uspl1)
ubiquitin specific peptidase like 1 		ENSMUST00000050472 (Uspl1-001) 149184560-149215434 protein_coding
ENSMUST00000100410 (Uspl1-003) 149184666-149215431 protein_coding
ENSMUST00000117878 (Uspl1-007) 149184716-149215433 protein_coding
ENSMUST00000119685 (Uspl1-004) 149184667-149215430 protein_coding
ENSMUST00000121416 (Uspl1-006) 149184350-149215428 protein_coding
ENSMUST00000122160 (Uspl1-002) 149184663-149215430 protein_coding
ENSMUST00000126168 (Uspl1-005) 149184678-149215430 nonsense_mediated_decay
ENSMUST00000139474 (Uspl1-009) 149184678-149194327 protein_coding
ENSMUST00000149896 (Uspl1-010) 149184781-149194094 processed_transcript
ENSMUST00000150921 (Uspl1-008) 149191336-149215434 retained_intron
ENSMUSG00000060063 (Alox5ap)
arachidonate 5-lipoxygenase activating protein 		ENSMUST00000071130 (Alox5ap-201) 149265058-149288045 protein_coding
ENSMUST00000130144 (Alox5ap-001) 149265058-149265182 protein_coding
ENSMUSG00000092674 (Gm24105)
predicted gene, 24105 		ENSMUST00000174933 (Gm24105-201) 149247952-149248244 misc_RNA
ENSMUSG00000100465 (RP23-408A1.2)
predicted gene 29264 		ENSMUST00000191240 (RP23-408A1.2-001) 149234816-149247682 lincRNA
ENSMUSG00000100783 (RP23-408A1.1)
RIKEN cDNA 2310047D07 gene 		ENSMUST00000189493 (RP23-408A1.1-001) 149231332-149237984 lincRNA
ENSMUST00000189639 (RP23-408A1.1-002) 149237154-149237966 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CN_0001ENSDARG00000034825ENSDART00000043802ENSDART00000124060ENSDARG00000054755ENSDART00000077008CIL_0004CN_0002ENSG00000132952ENST00000255304ENST00000465952ENST00000614860ENSG00000132965ENST00000380490ENST00000479597ENST00000617770ENSG00000275788ENST00000612609CIL_0004CN_0003ENSMUSG00000041264ENSMUST00000050472ENSMUST00000100410ENSMUST00000117878ENSMUST00000119685ENSMUST00000121416ENSMUST00000122160ENSMUST00000126168ENSMUST00000139474ENSMUST00000149896ENSMUST00000150921ENSMUSG00000060063ENSMUST00000071130ENSMUST00000130144ENSMUSG00000092674ENSMUST00000174933ENSMUSG00000100465ENSMUST00000191240ENSMUSG00000100783ENSMUST00000189493ENSMUST00000189639
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CN_0001ENSDARG00000034825ENSDART00000043802ENSDARG00000054755ENSDART00000077008CIL_0004CN_0002ENSG00000132952ENST00000255304ENST00000465952ENST00000614860ENSG00000132965ENST00000380490ENST00000617770ENSG00000275788ENST00000612609CIL_0004CN_0003ENSMUSG00000041264ENSMUST00000050472ENSMUST00000100410ENSMUST00000117878ENSMUST00000119685ENSMUST00000121416ENSMUST00000122160ENSMUST00000126168ENSMUST00000139474ENSMUST00000150921ENSMUSG00000060063ENSMUST00000071130ENSMUSG00000092674ENSMUST00000174933ENSMUSG00000100465ENSMUST00000191240ENSMUSG00000100783ENSMUST00000189493ENSMUST00000189639
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034825 ENSDART00000043802 N/A N/A N/A 19.192±2.23 N/A N/A 3.891±1.67 5.045±0.00 3.394±0.00 N/A 1.815±0.00 N/A N/A N/A
ENSDART00000124060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000054755 ENSDART00000077008 N/A N/A N/A 1.639±0.19 N/A N/A 2.228±1.08 23.524±6.80 0.156±0.00 N/A 5.044±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132952 ENST00000255304 2.880±0.00 3.885±0.00 0.686±0.00 1.932±0.54 2.339±0.21 2.040±0.29 1.322±0.50 1.972±0.00 1.182±0.64 2.359±1.36 1.347±0.04 3.775±0.26 1.320±0.53 5.716±0.34
ENST00000465952 N/A N/A 0.991±0.00 3.463±0.00 4.930±0.00 2.873±0.00 1.405±0.00 2.540±0.00 6.628±0.00 6.472±0.00 1.013±0.00 7.670±0.00 N/A N/A
ENST00000614860 N/A 1.439±0.00 N/A 0.793±0.29 0.314±0.00 1.086±0.00 0.502±0.00 1.856±0.00 0.295±0.00 0.412±0.00 0.467±0.00 2.336±0.70 0.379±0.05 2.066±0.93
ENSG00000132965 ENST00000380490 19.582±0.00 19.031±0.00 0.351±0.00 8.243±4.61 4.673±3.89 6.479±0.85 4.988±2.66 8.348±7.70 3.673±1.52 47.109±18.02 1.664±0.00 6.689±2.62 28.034±3.74 4.166±2.37
ENST00000479597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00
ENSG00000275788 ENST00000612609 0.088±0.00 0.383±0.00 N/A 0.760±0.00 0.721±0.00 N/A 0.350±0.00 0.202±0.00 N/A 1.173±0.00 0.249±0.00 1.979±0.00 0.163±0.00 0.610±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041264 ENSMUST00000050472 0.925±0.44 1.070±0.37 N/A 1.730±0.00 N/A 1.081±0.11 N/A 0.731±0.00 1.192±0.45 0.893±0.20 1.153±0.00 2.061±0.23 3.392±0.81 1.825±0.00
ENSMUST00000100410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.736±0.09 3.362±0.00
ENSMUST00000117878 1.766±0.00 N/A 2.871±0.22 2.587±0.00 2.962±0.00 1.356±0.03 1.204±0.37 1.795±0.24 1.628±0.75 1.304±0.13 3.159±0.58 2.905±0.98 3.745±1.34 2.704±0.48
ENSMUST00000119685 3.512±1.96 1.839±1.42 N/A 2.028±0.65 3.362±1.02 3.015±0.86 1.253±0.31 1.714±0.84 1.277±0.44 1.622±0.78 N/A 3.086±1.08 2.304±0.60 1.704±0.34
ENSMUST00000121416 N/A N/A 3.012±0.09 4.634±0.70 1.436±0.00 N/A 0.996±0.19 N/A 1.985±0.50 0.580±0.00 4.547±0.82 1.136±0.24 3.147±0.09 4.888±0.64
ENSMUST00000122160 N/A N/A N/A N/A 1.226±0.00 N/A N/A 1.154±0.50 0.753±0.25 0.915±0.05 N/A 1.931±0.69 1.786±0.48 1.405±0.06
ENSMUST00000126168 0.551±0.00 N/A 1.467±0.01 2.847±0.51 2.259±0.80 N/A 1.088±0.53 2.013±0.62 1.457±0.50 0.900±0.00 1.161±0.11 1.603±0.23 N/A 1.763±0.00
ENSMUST00000139474 N/A 3.327±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150921 0.823±0.24 0.715±0.00 N/A N/A 0.539±0.00 0.646±0.22 N/A N/A 0.555±0.00 N/A N/A 1.241±0.57 N/A N/A
ENSMUSG00000060063 ENSMUST00000071130 30.734±2.20 6.958±0.80 17.231±0.52 2.624±0.11 36.862±1.71 9.292±0.97 9.517±1.78 6.413±0.60 14.575±16.08 54.623±4.14 0.965±0.32 21.387±7.79 4.280±3.07 1.286±0.61
ENSMUST00000130144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092674 ENSMUST00000174933 N/A N/A N/A 0.066±0.00 0.527±0.00 0.346±0.00 N/A N/A N/A N/A N/A 0.604±0.00 N/A 0.293±0.09
ENSMUSG00000100465 ENSMUST00000191240 0.234±0.06 0.135±0.00 N/A 0.129±0.00 0.307±0.12 0.088±0.03 0.090±0.03 0.068±0.03 0.054±0.03 0.081±0.00 0.512±0.01 0.227±0.11 0.152±0.08 0.428±0.25
ENSMUSG00000100783 ENSMUST00000189493 N/A 0.078±0.03 N/A N/A 0.527±0.17 N/A 0.295±0.09 N/A N/A 0.110±0.00 5.575±1.37 0.304±0.00 N/A 0.307±0.00
ENSMUST00000189639 0.089±0.04 0.069±0.02 N/A N/A 0.283±0.00 N/A 0.186±0.00 0.179±0.11 0.099±0.03 N/A 3.304±0.75 0.475±0.03 0.206±0.08 0.066±0.00

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