C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S11, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121547 Rps11-ps2-001 ENSMUSG00000081929 10090 + 11:116382750-116383205 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121547
Transcript ID Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121547 0.199±0.00 0.544±0.14 0.616±0.55 0.110±0.00 0.106±0.01 0.143±0.00 0.761±0.59 0.212±0.00 0.290±0.00 0.241±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_0007CH CIL_0007CH_0002 CGP 11:116330704-116413032
CIL_0007BT CIL_0007BT_0002 CGP 11:116336353-116439077

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270625 RPS11-001 protein_coding Homo_sapiens 0 514
ENST00000442125 RPS11P7-001 processed_pseudogene Homo_sapiens 0 342
ENST00000594493 RPS11-003 protein_coding Homo_sapiens 0 514
ENST00000596873 RPS11-006 protein_coding Homo_sapiens 0 387
ENST00000599167 RPS11-004 retained_intron Homo_sapiens 2e-21 108
ENST00000600027 RPS11-005 retained_intron Homo_sapiens 0 237
ENST00000601216 RPS11-007 retained_intron Homo_sapiens 0 257
ENST00000601306 RPS11-009 nonsense_mediated_decay Homo_sapiens 0 514
ENST00000602252 RPS11-002 retained_intron Homo_sapiens 0 385

Loading