C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122227 Rdh12-003 ENSMUSG00000021123 10090 + 12:79208931-79222664 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLiverMuscleOvaryTestisENSMUST00000122227
Transcript ID Adipose Adrenal Colon Heart Kidney Liver Muscle Ovary Testis
ENSMUST00000122227 0.220±0.08 0.073±0.04 0.297±0.13 0.257±0.09 0.335±0.08 0.066±0.01 0.105±0.03 0.285±0.19 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0001JS CIL_0001JS_0003 CGP 12:79208914-79296282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004745 ISS retinol dehydrogenase activity
GO:0005622 ISS intracellular
GO:0007601 IEA visual perception
GO:0042572 ISS retinol metabolic process
GO:0050896 IEA response to stimulus
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267502 RDH12-201 protein_coding Homo_sapiens 0 377
ENST00000551171 RDH12-001 protein_coding Homo_sapiens 0 377

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