C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021123 Rdh12 10090 + 12:79208914-79222665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021548 Rdh12-001 79208914-79222665 protein_coding
  ENSMUST00000122227 Rdh12-003 79208931-79222664 protein_coding
  ENSMUST00000140823 Rdh12-004 79210661-79212755 protein_coding
  ENSMUST00000151980 Rdh12-002 79208947-79222664 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021548 0.327±0.06 0.065±0.01 2.613±0.52 0.423±0.15 1.029±0.63 0.330±0.17 0.215±0.00 0.217±0.15 0.655±0.64 2.284±1.84 0.124±0.08 0.393±0.21 5.855±2.13 0.135±0.10
ENSMUST00000122227 0.220±0.08 0.073±0.04 N/A N/A N/A 0.297±0.13 0.257±0.09 0.335±0.08 0.066±0.01 N/A 0.105±0.03 0.285±0.19 N/A 0.089±0.00
ENSMUST00000140823 N/A N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A N/A 0.172±0.00 0.271±0.00 N/A 0.159±0.00
ENSMUST00000151980 0.155±0.07 N/A 0.636±0.03 0.093±0.00 0.636±0.22 0.089±0.01 0.081±0.01 0.104±0.07 0.129±0.15 0.592±0.52 0.061±0.02 0.194±0.10 N/A 0.063±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0001JS CIL_0001JS_0003 CGP 12:79208914-79296282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004745 ISS retinol dehydrogenase activity
GO:0005515 IEA protein binding
GO:0005622 ISS intracellular
GO:0007601 IEA visual perception
GO:0016491 IEA oxidoreductase activity
GO:0042572 ISS retinol metabolic process
GO:0050896 IEA response to stimulus
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018069 rdh12 retinol dehydrogenase 12 (all-trans and 9-cis) protein_coding Danio_rerio
ENSG00000139988 RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) protein_coding Homo_sapiens

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