C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000018069-ENSDARG00000040131 CGP 7955 13:33279150-33338535
GeneTranscriptPositionBiotype
ENSDARG00000018069 (rdh12)
retinol dehydrogenase 12 (all-trans and 9-cis) 		ENSDART00000137315 (rdh12-001) 33279150-33289432 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001JS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139988-ENSG00000072121 CGP 9606 14:67701886-67816590
GeneTranscriptPositionBiotype
ENSG00000072121 (ZFYVE26)
zinc finger, FYVE domain containing 26 		ENST00000347230 (ZFYVE26-001) 67746520-67816589 protein_coding
ENST00000394455 (ZFYVE26-009) 67727374-67770477 retained_intron
ENST00000553399 (ZFYVE26-010) 67815529-67816590 retained_intron
ENST00000554523 (ZFYVE26-004) 67748229-67816587 retained_intron
ENST00000554557 (ZFYVE26-007) 67748033-67816580 nonsense_mediated_decay
ENST00000554783 (ZFYVE26-012) 67753711-67756421 retained_intron
ENST00000555452 (ZFYVE26-002) 67760782-67816587 protein_coding
ENST00000557204 (ZFYVE26-011) 67777584-67778327 retained_intron
ENST00000557306 (ZFYVE26-008) 67750473-67761491 protein_coding
ENST00000557366 (ZFYVE26-006) 67796221-67816585 retained_intron
ENST00000557407 (ZFYVE26-005) 67797320-67816585 retained_intron
ENSG00000139988 (RDH12)
retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 		ENST00000267502 (RDH12-201) 67720842-67734450 protein_coding
ENST00000547463 (RDH12-003) 67717806-67720899 processed_transcript
ENST00000551171 (RDH12-001) 67701886-67734452 protein_coding
ENST00000552873 (RDH12-002) 67727164-67729746 retained_intron
ENSG00000239820 (RN7SL213P)
RNA, 7SL, cytoplasmic 213, pseudogene 		ENST00000463482 (RN7SL213P-201) 67751228-67751544 misc_RNA
ENSG00000258759 (RP11-1012A1.7)
 ENST00000557141 (RP11-1012A1.7-001) 67799004-67799609 processed_pseudogene
ENSG00000271697 (RP11-1012A1.10)
 ENST00000604500 (RP11-1012A1.10-001) 67735195-67735350 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001JS_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021123-ENSMUSG00000066440 CGP 10090 12:79208914-79296282
GeneTranscriptPositionBiotype
ENSMUSG00000021123 (Rdh12)
retinol dehydrogenase 12 		ENSMUST00000021548 (Rdh12-001) 79208914-79222665 protein_coding
ENSMUST00000122227 (Rdh12-003) 79208931-79222664 protein_coding
ENSMUST00000140823 (Rdh12-004) 79210661-79212755 protein_coding
ENSMUST00000151980 (Rdh12-002) 79208947-79222664 retained_intron
ENSMUSG00000066440 (Zfyve26)
zinc finger, FYVE domain containing 26 		ENSMUST00000021547 (Zfyve26-201) 79232347-79296282 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JS_0001ENSDARG00000018069ENSDART00000137315CIL_0001JS_0002ENSG00000072121ENST00000347230ENST00000394455ENST00000553399ENST00000554523ENST00000554557ENST00000554783ENST00000555452ENST00000557204ENST00000557306ENST00000557366ENST00000557407ENSG00000139988ENST00000267502ENST00000547463ENST00000551171ENST00000552873ENSG00000239820ENST00000463482ENSG00000258759ENST00000557141ENSG00000271697ENST00000604500CIL_0001JS_0003ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000066440ENSMUST00000021547
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JS_0001ENSDARG00000018069ENSDART00000137315CIL_0001JS_0002ENSG00000072121ENST00000347230ENST00000394455ENST00000554523ENST00000554557ENST00000555452ENST00000557407ENSG00000139988ENST00000267502ENSG00000239820ENST00000463482ENSG00000258759ENST00000557141ENSG00000271697ENST00000604500CIL_0001JS_0003ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000066440ENSMUST00000021547
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018069 ENSDART00000137315 N/A N/A N/A 29.462±9.58 N/A N/A 2.535±2.00 12.168±7.84 9.437±0.00 N/A 2.045±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072121 ENST00000347230 1.447±0.00 1.037±0.00 0.941±0.00 1.034±0.19 1.367±0.42 1.055±0.62 1.390±1.12 0.559±0.00 0.927±0.28 1.420±0.50 1.065±0.17 1.299±0.52 1.325±0.63 1.286±0.01
ENST00000394455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.740±0.00 N/A N/A
ENST00000553399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554523 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A 0.571±0.00 1.341±0.00 N/A N/A N/A N/A
ENST00000554557 N/A 0.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555452 N/A 0.809±0.00 N/A 0.464±0.00 0.790±0.14 N/A 0.405±0.00 N/A N/A 0.969±0.00 0.741±0.00 1.215±0.00 N/A N/A
ENST00000557204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.299±0.00 N/A N/A N/A
ENSG00000139988 ENST00000267502 N/A N/A 1.888±0.00 N/A N/A N/A N/A N/A 3.732±0.00 N/A N/A N/A N/A N/A
ENST00000547463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239820 ENST00000463482 N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 0.292±0.00 0.147±0.00 N/A 0.154±0.00 N/A N/A
ENSG00000258759 ENST00000557141 N/A N/A 0.250±0.00 N/A N/A 0.098±0.00 N/A 0.065±0.00 N/A N/A N/A 0.066±0.03 N/A 0.051±0.00
ENSG00000271697 ENST00000604500 0.326±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021123 ENSMUST00000021548 0.327±0.06 0.065±0.01 2.613±0.52 0.423±0.15 1.029±0.63 0.330±0.17 0.215±0.00 0.217±0.15 0.655±0.64 2.284±1.84 0.124±0.08 0.393±0.21 5.855±2.13 0.135±0.10
ENSMUST00000122227 0.220±0.08 0.073±0.04 N/A N/A N/A 0.297±0.13 0.257±0.09 0.335±0.08 0.066±0.01 N/A 0.105±0.03 0.285±0.19 N/A 0.089±0.00
ENSMUST00000140823 N/A N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A N/A 0.172±0.00 0.271±0.00 N/A 0.159±0.00
ENSMUST00000151980 0.155±0.07 N/A 0.636±0.03 0.093±0.00 0.636±0.22 0.089±0.01 0.081±0.01 0.104±0.07 0.129±0.15 0.592±0.52 0.061±0.02 0.194±0.10 N/A 0.063±0.04
ENSMUSG00000066440 ENSMUST00000021547 4.374±0.74 3.150±0.49 3.065±0.10 1.573±0.69 4.242±2.01 2.711±0.75 1.510±0.27 3.341±0.71 2.729±0.68 4.055±0.34 2.041±0.22 4.438±1.01 7.576±3.71 2.214±0.56

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