C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 12 (all-trans/9-cis/11-cis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267502 RDH12-201 ENSG00000139988 9606 + 14:67720842-67734450 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverENST00000267502
Transcript ID Bladder Liver
ENST00000267502 1.888±0.00 3.732±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0001 CGP 14:67676801-67734452
CIL_0001JS CIL_0001JS_0002 CGP 14:67701886-67816590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0003824 IEA catalytic activity
GO:0004745 IDA retinol dehydrogenase activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0007601 TAS visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0016491 IEA oxidoreductase activity
GO:0042572 IDA retinol metabolic process
GO:0045494 TAS photoreceptor cell maintenance
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process
GO:0060342 TAS photoreceptor inner segment membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021548 Rdh12-001 protein_coding Mus_musculus 0 928
ENSMUST00000151980 Rdh12-002 retained_intron Mus_musculus 0 377
ENSMUST00000122227 Rdh12-003 protein_coding Mus_musculus 0 377

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