C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 9816
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122292 Gm9816-001 ENSMUSG00000085783 10090 + 16:62717037-62718450 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000122292
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000122292 5.488±0.51 3.011±0.22 2.096±0.14 3.519±0.41 2.328±0.26 1.421±0.28 1.364±0.15 2.240±0.36 2.064±0.98 1.744±0.05 0.246±0.06 7.615±2.91 1.316±0.42 3.917±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VB CIL_0007VB_0002 VISTA 16:62168252-62770783

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306823 GPS1-004 protein_coding Homo_sapiens 0 1565
ENST00000320548 GPS1-003 protein_coding Homo_sapiens 0 1620
ENST00000392357 GPS1-007 retained_intron Homo_sapiens 0 473
ENST00000392358 GPS1-006 protein_coding Homo_sapiens 0 1620
ENST00000578168 GPS1-024 protein_coding Homo_sapiens 4e-20 102
ENST00000578279 GPS1-023 retained_intron Homo_sapiens 0 484
ENST00000578552 GPS1-001 protein_coding Homo_sapiens 0 1620
ENST00000580141 GPS1-016 nonsense_mediated_decay Homo_sapiens 0 942
ENST00000580716 GPS1-010 protein_coding Homo_sapiens 0 494
ENST00000580723 GPS1-021 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000583486 GPS1-025 retained_intron Homo_sapiens 0 283
ENST00000583641 GPS1-012 protein_coding Homo_sapiens 0 555
ENST00000584460 GPS1-005 nonsense_mediated_decay Homo_sapiens 0 1565
ENST00000585084 GPS1-009 protein_coding Homo_sapiens 0 710
ENST00000623691 GPS1-028 protein_coding Homo_sapiens 0 1600
ENST00000623761 GPS1-029 protein_coding Homo_sapiens 0 1600
ENST00000624957 GPS1-027 protein_coding Homo_sapiens 0 1544

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