C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007VB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1462 VISTA 9606 3:94032174-94634985
GeneTranscriptPositionBiotype
ENSG00000169379 (ARL13B)
ADP-ribosylation factor-like 13B 		ENST00000303097 (ARL13B-001) 93980142-94055279 protein_coding
ENST00000335438 (ARL13B-002) 93980190-94055279 nonsense_mediated_decay
ENST00000394222 (ARL13B-005) 93980149-94054154 protein_coding
ENST00000460371 (ARL13B-009) 93980170-94055281 nonsense_mediated_decay
ENST00000471138 (ARL13B-004) 93980155-94054069 protein_coding
ENST00000475206 (ARL13B-003) 93980270-94003902 nonsense_mediated_decay
ENST00000478400 (ARL13B-006) 93980142-93996684 protein_coding
ENST00000486562 (ARL13B-007) 93980214-94039915 processed_transcript
ENST00000492165 (ARL13B-008) 93980288-94003909 processed_transcript
ENST00000535334 (ARL13B-201) 93980139-94055668 protein_coding
ENSG00000178660 (ARMC10P1)
armadillo repeat containing 10 pseudogene 1 		ENST00000313754 (ARMC10P1-001) 94506766-94507620 processed_pseudogene
ENSG00000178694 (NSUN3)
NOP2/Sun domain family, member 3 		ENST00000314622 (NSUN3-001) 94062916-94128545 protein_coding
ENST00000461625 (NSUN3-004) 94063011-94064518 processed_transcript
ENST00000468555 (NSUN3-005) 94063061-94084176 processed_transcript
ENST00000476588 (NSUN3-002) 94062990-94085382 retained_intron
ENST00000477077 (NSUN3-003) 94062980-94064403 processed_transcript
ENST00000483378 (NSUN3-007) 94062980-94095094 nonsense_mediated_decay
ENST00000485793 (NSUN3-006) 94062998-94082173 processed_transcript
ENST00000494128 (NSUN3-008) 94076342-94081821 processed_transcript
ENSG00000178700 (DHFRL1)
dihydrofolate reductase-like 1 		ENST00000314636 (DHFRL1-002) 94057922-94062987 protein_coding
ENST00000394221 (DHFRL1-001) 94057924-94063223 protein_coding
ENST00000461173 (DHFRL1-003) 94058725-94062899 nonsense_mediated_decay
ENST00000481631 (DHFRL1-005) 94047836-94062841 processed_transcript
ENST00000496983 (DHFRL1-004) 94061169-94063389 protein_coding
ENST00000619045 (DHFRL1-201) 94058754-94062899 protein_coding
CIL_0007VB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1462 VISTA 10090 16:62168252-62770783
GeneTranscriptPositionBiotype
ENSMUSG00000050312 (Nsun3)
NOL1/NOP2/Sun domain family member 3 		ENSMUST00000063089 (Nsun3-001) 62732444-62786777 protein_coding
ENSMUST00000143314 (Nsun3-002) 62732444-62786777 nonsense_mediated_decay
ENSMUST00000151583 (Nsun3-006) 62776166-62786818 processed_transcript
ENSMUST00000152553 (Nsun3-004) 62770692-62786766 protein_coding
ENSMUST00000152842 (Nsun3-003) 62779251-62786713 processed_transcript
ENSMUST00000156676 (Nsun3-005) 62735161-62767123 processed_transcript
ENSMUSG00000085783 (Gm9816)
predicted pseudogene 9816 		ENSMUST00000122292 (Gm9816-001) 62717037-62718450 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VB_0001ENSG00000169379ENST00000303097ENST00000335438ENST00000394222ENST00000460371ENST00000471138ENST00000475206ENST00000478400ENST00000486562ENST00000492165ENST00000535334ENSG00000178660ENST00000313754ENSG00000178694ENST00000314622ENST00000461625ENST00000468555ENST00000476588ENST00000477077ENST00000483378ENST00000485793ENST00000494128ENSG00000178700ENST00000314636ENST00000394221ENST00000461173ENST00000481631ENST00000496983ENST00000619045CIL_0007VB_0002ENSMUSG00000050312ENSMUST00000063089ENSMUST00000143314ENSMUST00000151583ENSMUST00000152553ENSMUST00000152842ENSMUST00000156676ENSMUSG00000085783ENSMUST00000122292
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VB_0001ENSG00000169379ENST00000303097ENST00000335438ENST00000394222ENST00000460371ENST00000471138ENST00000475206ENST00000486562ENST00000492165ENSG00000178660ENST00000313754ENSG00000178694ENST00000314622ENST00000476588ENST00000483378ENSG00000178700ENST00000314636ENST00000394221ENST00000461173ENST00000619045CIL_0007VB_0002ENSMUSG00000050312ENSMUST00000063089ENSMUST00000143314ENSMUSG00000085783ENSMUST00000122292
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169379 ENST00000303097 N/A 1.453±0.00 N/A N/A 0.720±0.00 N/A 0.325±0.00 1.244±0.00 0.554±0.00 N/A N/A 0.718±0.39 0.316±0.00 N/A
ENST00000335438 1.471±0.00 0.620±0.00 N/A 0.503±0.11 0.680±0.02 N/A 0.248±0.16 1.483±0.00 0.399±0.04 N/A N/A 1.096±0.38 0.395±0.19 2.699±0.00
ENST00000394222 N/A N/A 1.057±0.00 0.902±0.20 0.274±0.00 0.966±0.15 0.340±0.00 N/A 1.475±0.00 1.875±0.00 N/A 0.634±0.00 N/A N/A
ENST00000460371 N/A N/A N/A 0.278±0.00 N/A 1.465±0.00 N/A N/A N/A N/A 0.255±0.00 0.810±0.00 1.137±0.00 3.439±0.00
ENST00000471138 1.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.212±0.00 1.932±0.00 2.215±0.00 7.183±0.00
ENST00000475206 N/A N/A N/A N/A N/A N/A 1.188±0.00 N/A N/A N/A 0.398±0.00 N/A N/A N/A
ENST00000478400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.875±0.00 N/A N/A
ENST00000492165 N/A N/A N/A 3.370±0.00 N/A N/A N/A N/A N/A 3.563±0.00 2.703±0.00 5.017±0.00 N/A N/A
ENST00000535334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178660 ENST00000313754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.10 N/A N/A
ENSG00000178694 ENST00000314622 0.480±0.00 N/A N/A 0.892±0.00 N/A 0.385±0.00 0.697±0.23 0.519±0.00 0.579±0.00 0.308±0.00 0.370±0.07 1.380±0.00 0.843±0.34 0.978±0.00
ENST00000461625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476588 N/A N/A 0.914±0.00 N/A 2.751±0.00 N/A N/A N/A N/A N/A N/A 1.203±0.00 N/A N/A
ENST00000477077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.695±0.00
ENST00000485793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178700 ENST00000314636 1.021±0.00 1.167±0.00 0.855±0.00 1.647±0.80 0.872±0.07 0.708±0.00 0.665±0.00 1.703±0.48 1.080±0.00 0.406±0.00 0.320±0.00 1.691±0.85 1.302±0.50 1.079±0.32
ENST00000394221 N/A 0.738±0.00 N/A N/A 0.466±0.00 0.588±0.07 N/A N/A N/A N/A N/A N/A N/A 0.607±0.00
ENST00000461173 N/A N/A N/A N/A N/A 1.966±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619045 N/A N/A N/A N/A N/A N/A N/A N/A 2.730±0.00 1.941±0.00 0.198±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000050312 ENSMUST00000063089 1.604±0.24 1.275±0.50 1.158±0.19 0.685±0.25 1.398±0.31 1.172±0.40 0.421±0.13 1.215±0.27 1.502±0.55 0.971±0.42 0.913±0.17 1.165±0.66 0.869±0.52 1.155±0.56
ENSMUST00000143314 1.475±0.54 1.129±0.44 2.043±0.28 1.132±0.58 1.984±0.74 2.371±0.84 0.892±0.13 2.341±0.77 1.590±0.73 1.751±0.23 1.037±0.21 1.950±0.84 1.101±0.30 0.833±0.34
ENSMUST00000151583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085783 ENSMUST00000122292 5.488±0.51 3.011±0.22 2.096±0.14 3.519±0.41 2.328±0.26 1.421±0.28 1.364±0.15 2.240±0.36 2.064±0.98 1.744±0.05 0.246±0.06 7.615±2.91 1.316±0.42 3.917±0.36

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