C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122975 Rapgef4-009 ENSMUSG00000049044 10090 + 2:72140711-72196261 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryENSMUST00000122975
Transcript ID Brain Ovary
ENSMUST00000122975 151.078±0.00 14.833±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KA CIL_0004KA_0002 CGP 2:71873224-72257474
CIL_0003IJ CIL_0003IJ_0003 CGP 2:71981240-72442610

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397081 RAPGEF4-001 protein_coding Homo_sapiens 0 915
ENST00000397087 RAPGEF4-004 protein_coding Homo_sapiens 0 915
ENST00000409036 RAPGEF4-011 protein_coding Homo_sapiens 0 915
ENST00000459852 RAPGEF4-008 processed_transcript Homo_sapiens 0 481
ENST00000466030 RAPGEF4-006 processed_transcript Homo_sapiens 0 610
ENST00000473003 RAPGEF4-013 processed_transcript Homo_sapiens 0 383
ENST00000473043 RAPGEF4-010 processed_transcript Homo_sapiens 0 800
ENST00000473182 RAPGEF4-007 retained_intron Homo_sapiens 0 248
ENST00000535187 RAPGEF4-201 protein_coding Homo_sapiens 0 802
ENST00000538974 RAPGEF4-202 protein_coding Homo_sapiens 0 800
ENST00000540783 RAPGEF4-203 protein_coding Homo_sapiens 0 915

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