C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000535187 RAPGEF4-201 ENSG00000091428 9606 + 2:172928205-173052887 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonOvaryPlacentaTestisENST00000535187
Transcript ID Adrenal Colon Ovary Placenta Testis
ENST00000535187 1.490±0.00 0.945±0.00 0.910±0.02 0.182±0.00 0.590±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KA CIL_0004KA_0001 CGP 2:172555373-173052893
CIL_0003IJ CIL_0003IJ_0002 CGP 2:172735274-173268010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005622 IEA intracellular
GO:0005952 IEA cAMP-dependent protein kinase complex
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008603 IEA cAMP-dependent protein kinase regulator activity
GO:0035556 IEA intracellular signal transduction
GO:0045859 IEA regulation of protein kinase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028525 Rapgef4-005 protein_coding Mus_musculus 0 3504
ENSMUST00000090826 Rapgef4-001 protein_coding Mus_musculus 0 3504
ENSMUST00000102698 Rapgef4-003 protein_coding Mus_musculus 0 3369
ENSMUST00000153887 Rapgef4-006 processed_transcript Mus_musculus 0 3181
ENSMUST00000122975 Rapgef4-009 processed_transcript Mus_musculus 0 802
ENSMUST00000156031 Rapgef4-010 processed_transcript Mus_musculus 0 545
ENSMUST00000146970 Rapgef4-011 processed_transcript Mus_musculus 0 342

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