C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004KA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152256-ENSG00000091428 CGP 9606 2:172555373-173052893
GeneTranscriptPositionBiotype
ENSG00000091428 (RAPGEF4)
Rap guanine nucleotide exchange factor (GEF) 4 		ENST00000397081 (RAPGEF4-001) 172735841-173052887 protein_coding
ENST00000397085 (RAPGEF4-003) 173026626-173036795 protein_coding
ENST00000397087 (RAPGEF4-004) 172821575-173052893 protein_coding
ENST00000409036 (RAPGEF4-011) 172735967-173052893 protein_coding
ENST00000459852 (RAPGEF4-008) 172967109-172988273 processed_transcript
ENST00000464976 (RAPGEF4-009) 172744138-172814740 processed_transcript
ENST00000466030 (RAPGEF4-006) 172928152-172967397 processed_transcript
ENST00000473003 (RAPGEF4-013) 172860038-172965638 processed_transcript
ENST00000473043 (RAPGEF4-010) 172889801-172990925 processed_transcript
ENST00000473182 (RAPGEF4-007) 172965141-172967316 retained_intron
ENST00000484331 (RAPGEF4-012) 172735274-172917837 processed_transcript
ENST00000484645 (RAPGEF4-002) 173048128-173051954 retained_intron
ENST00000535187 (RAPGEF4-201) 172928205-173052887 protein_coding
ENST00000538974 (RAPGEF4-202) 172860038-173052887 protein_coding
ENST00000540783 (RAPGEF4-203) 172860038-173052887 protein_coding
ENSG00000152256 (PDK1)
pyruvate dehydrogenase kinase, isozyme 1 		ENST00000282077 (PDK1-001) 172555969-172608669 protein_coding
ENST00000392571 (PDK1-003) 172556007-172595969 protein_coding
ENST00000410055 (PDK1-002) 172556051-172599137 protein_coding
ENST00000416991 (PDK1-008) 172556313-172570812 protein_coding
ENST00000431718 (PDK1-006) 172556102-172570820 nonsense_mediated_decay
ENST00000436490 (PDK1-005) 172555627-172564687 nonsense_mediated_decay
ENST00000439519 (PDK1-007) 172556565-172565073 protein_coding
ENST00000443353 (PDK1-004) 172555373-172565073 protein_coding
ENST00000466437 (PDK1-009) 172570585-172595962 retained_intron
ENSG00000230104 (AC018712.2)
 ENST00000455767 (AC018712.2-001) 172674212-172674898 processed_pseudogene
ENSG00000232292 (ALDH7A1P2)
aldehyde dehydrogenase 7 family, member A1 pseudogene 2 		ENST00000456501 (ALDH7A1P2-001) 172893763-172894383 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004KA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006494-ENSMUSG00000049044 CGP 10090 2:71873224-72257474
GeneTranscriptPositionBiotype
ENSMUSG00000006494 (Pdk1)
pyruvate dehydrogenase kinase, isoenzyme 1 		ENSMUST00000006669 (Pdk1-001) 71873224-71903858 protein_coding
ENSMUST00000129427 (Pdk1-008) 71887418-71896493 processed_transcript
ENSMUST00000129887 (Pdk1-005) 71875079-71883607 processed_transcript
ENSMUST00000134362 (Pdk1-007) 71873326-71886312 processed_transcript
ENSMUST00000148249 (Pdk1-006) 71873551-71884184 processed_transcript
ENSMUST00000151358 (Pdk1-003) 71873743-71888952 processed_transcript
ENSMUST00000152696 (Pdk1-004) 71873320-71883932 processed_transcript
ENSMUST00000156036 (Pdk1-002) 71873346-71901986 processed_transcript
ENSMUSG00000049044 (Rapgef4)
Rap guanine nucleotide exchange factor (GEF) 4 		ENSMUST00000028525 (Rapgef4-005) 72054604-72257472 protein_coding
ENSMUST00000090826 (Rapgef4-001) 71981240-72257474 protein_coding
ENSMUST00000102698 (Rapgef4-003) 71981287-72256376 protein_coding
ENSMUST00000122975 (Rapgef4-009) 72140711-72196261 processed_transcript
ENSMUST00000124004 (Rapgef4-008) 72054985-72141477 processed_transcript
ENSMUST00000146970 (Rapgef4-011) 72242294-72256655 processed_transcript
ENSMUST00000149421 (Rapgef4-007) 71981247-72034405 processed_transcript
ENSMUST00000150234 (Rapgef4-002) 71981259-72141301 processed_transcript
ENSMUST00000151236 (Rapgef4-004) 72140728-72163386 processed_transcript
ENSMUST00000153887 (Rapgef4-006) 72179693-72257472 processed_transcript
ENSMUST00000156031 (Rapgef4-010) 72198799-72208437 processed_transcript
ENSMUSG00000085001 (Rapgef4os2)
Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 		ENSMUST00000128165 (Rapgef4os2-001) 72224688-72232302 antisense
ENSMUSG00000085439 (Rapgef4os1)
Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1 		ENSMUST00000126462 (Rapgef4os1-001) 72097603-72148796 antisense
ENSMUSG00000086231 (Rapgef4os3)
Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 3 		ENSMUST00000132792 (Rapgef4os3-001) 72244965-72248975 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KA_0001ENSG00000091428ENST00000397081ENST00000397085ENST00000397087ENST00000409036ENST00000459852ENST00000464976ENST00000466030ENST00000473003ENST00000473043ENST00000473182ENST00000484331ENST00000484645ENST00000535187ENST00000538974ENST00000540783ENSG00000152256ENST00000282077ENST00000392571ENST00000410055ENST00000416991ENST00000431718ENST00000436490ENST00000439519ENST00000443353ENST00000466437ENSG00000230104ENST00000455767ENSG00000232292ENST00000456501CIL_0004KA_0002ENSMUSG00000006494ENSMUST00000006669ENSMUST00000129427ENSMUST00000129887ENSMUST00000134362ENSMUST00000148249ENSMUST00000151358ENSMUST00000152696ENSMUST00000156036ENSMUSG00000049044ENSMUST00000028525ENSMUST00000090826ENSMUST00000102698ENSMUST00000122975ENSMUST00000124004ENSMUST00000146970ENSMUST00000149421ENSMUST00000150234ENSMUST00000151236ENSMUST00000153887ENSMUST00000156031ENSMUSG00000085001ENSMUST00000128165ENSMUSG00000085439ENSMUST00000126462ENSMUSG00000086231ENSMUST00000132792
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KA_0001ENSG00000091428ENST00000397081ENST00000397085ENST00000397087ENST00000409036ENST00000466030ENST00000484645ENST00000535187ENST00000540783ENSG00000152256ENST00000282077ENST00000410055ENSG00000230104ENST00000455767ENSG00000232292ENST00000456501CIL_0004KA_0002ENSMUSG00000006494ENSMUST00000006669ENSMUST00000134362ENSMUST00000151358ENSMUST00000152696ENSMUST00000156036ENSMUSG00000049044ENSMUST00000028525ENSMUST00000090826ENSMUST00000102698ENSMUST00000122975ENSMUST00000146970ENSMUST00000153887ENSMUSG00000085001ENSMUST00000128165ENSMUSG00000085439ENSMUST00000126462ENSMUSG00000086231ENSMUST00000132792
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091428 ENST00000397081 0.352±0.00 0.690±0.00 N/A 21.403±15.04 0.847±0.00 0.437±0.00 0.804±0.00 N/A N/A N/A N/A 1.449±0.69 N/A N/A
ENST00000397085 N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.00 N/A N/A N/A N/A N/A
ENST00000397087 1.216±0.00 0.876±0.00 N/A N/A 0.841±0.00 0.363±0.00 0.140±0.00 0.896±0.00 0.200±0.00 4.589±2.97 0.252±0.00 1.549±0.73 0.222±0.12 0.460±0.00
ENST00000409036 N/A N/A N/A N/A N/A N/A 0.392±0.11 N/A N/A N/A N/A 3.815±0.00 N/A N/A
ENST00000459852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.771±0.00 N/A N/A
ENST00000473003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.519±0.00 N/A N/A N/A
ENST00000535187 N/A 1.490±0.00 N/A N/A N/A 0.945±0.00 N/A N/A N/A N/A N/A 0.910±0.02 0.182±0.00 0.590±0.13
ENST00000538974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.382±0.00 0.240±0.04 N/A
ENSG00000152256 ENST00000282077 N/A 1.448±0.00 N/A 0.660±0.02 1.766±0.00 N/A 1.714±0.00 N/A 0.672±0.44 1.975±0.00 N/A 2.122±1.58 N/A N/A
ENST00000392571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410055 N/A N/A N/A 3.182±0.00 N/A N/A 6.729±0.00 N/A 1.344±0.00 N/A 1.796±0.00 3.261±1.46 N/A N/A
ENST00000416991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230104 ENST00000455767 N/A N/A N/A 0.209±0.17 N/A N/A N/A N/A N/A N/A N/A 0.221±0.11 N/A 0.085±0.00
ENSG00000232292 ENST00000456501 N/A 0.040±0.00 N/A 0.112±0.00 N/A N/A N/A N/A N/A N/A N/A 0.452±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006494 ENSMUST00000006669 7.098±2.05 7.442±1.35 7.263±0.44 4.310±1.34 9.831±5.25 6.952±1.14 17.767±4.86 7.289±0.83 8.148±1.14 4.999±0.67 11.331±1.04 4.985±1.41 3.943±1.69 1.189±0.59
ENSMUST00000129427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134362 N/A 20.774±3.12 N/A N/A 20.580±6.66 4.827±0.00 N/A N/A 11.486±0.50 5.013±1.15 N/A 5.829±1.22 N/A 1.565±0.00
ENSMUST00000148249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.483±1.40 N/A
ENSMUST00000152696 N/A 95.006±21.48 N/A N/A N/A 13.333±1.27 N/A N/A N/A N/A N/A 9.808±3.07 N/A N/A
ENSMUST00000156036 3.725±0.40 N/A 4.307±0.59 1.104±0.00 4.139±0.83 N/A N/A 1.918±0.23 9.194±2.19 2.297±0.27 N/A 4.574±1.16 5.875±1.98 1.553±0.53
ENSMUSG00000049044 ENSMUST00000028525 0.730±0.16 24.666±10.92 N/A 1.183±0.46 0.824±0.17 0.477±0.13 1.104±0.19 2.248±0.15 N/A 3.649±0.72 0.088±0.03 3.088±1.99 0.701±0.64 0.465±0.00
ENSMUST00000090826 0.687±0.14 6.776±0.00 N/A 3.918±0.79 N/A 0.149±0.00 1.845±0.34 N/A 0.368±0.04 0.626±0.00 N/A 1.420±0.32 0.169±0.08 0.372±0.00
ENSMUST00000102698 N/A N/A N/A 91.311±0.00 N/A N/A N/A N/A N/A N/A 0.147±0.00 4.271±0.00 N/A 0.895±0.00
ENSMUST00000122975 N/A N/A N/A 151.078±0.00 N/A N/A N/A N/A N/A N/A N/A 14.833±0.00 N/A N/A
ENSMUST00000124004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146970 N/A 122.478±30.31 N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.237±0.00 N/A N/A
ENSMUST00000149421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153887 N/A 13.479±1.77 N/A 16.229±15.33 N/A N/A N/A N/A 15.688±12.78 N/A 0.331±0.08 5.242±3.69 0.315±0.00 0.656±0.19
ENSMUST00000156031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085001 ENSMUST00000128165 N/A N/A 8.000±0.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085439 ENSMUST00000126462 N/A 0.256±0.00 N/A 0.932±1.15 0.259±0.07 N/A 0.195±0.00 0.111±0.04 0.171±0.12 0.132±0.00 0.150±0.04 1.725±1.26 0.495±0.49 0.182±0.04
ENSMUSG00000086231 ENSMUST00000132792 0.227±0.13 0.754±0.03 0.057±0.01 0.260±0.17 0.312±0.20 0.070±0.02 0.096±0.02 0.088±0.03 0.343±0.21 N/A 0.049±0.01 0.697±0.28 0.068±0.04 0.194±0.10

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