C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prostaglandin reductase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123614 Ptgr2-001 ENSMUSG00000072946 10090 + 12:84285232-84315832 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123614 16.199±3.91 7.421±0.56 13.365±0.17 5.594±3.49 6.433±3.09 4.991±0.94 26.826±2.20 19.504±2.92 9.926±2.87 8.436±1.37 15.416±2.34 5.231±3.89 7.322±1.53 2.234±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089E CIL_00089E_0002 VISTA 12:83875691-84476743
CIL_0003PQ CIL_0003PQ_0002 CGP 12:84149176-84315832
CIL_0001TJ CIL_0001TJ_0002 CGP 12:84285232-84343830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005829 TAS cytosol
GO:0006693 ISS prostaglandin metabolic process
GO:0036132 IEA 13-prostaglandin reductase activity
GO:0047522 ISS 15-oxoprostaglandin 13-oxidase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267568 PTGR2-003 protein_coding Homo_sapiens 0 1144
ENST00000553813 PTGR2-008 protein_coding Homo_sapiens 0 798
ENST00000555228 PTGR2-004 protein_coding Homo_sapiens 0 1116
ENST00000555661 PTGR2-001 protein_coding Homo_sapiens 0 1120
ENST00000556219 PTGR2-005 retained_intron Homo_sapiens 0 575
ENST00000556551 RP5-1021I20.4-001 nonsense_mediated_decay Homo_sapiens 0 619

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