C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 16 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125098 Vps16-008 ENSMUSG00000027411 10090 + 2:130441608-130443399 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000125098
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000125098 24.772±0.00 37.332±0.00 40.498±0.00 6.788±1.55 54.962±3.32 39.035±15.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_00006D CIL_00006D_0002 CGP 2:130406478-130424701
CIL_00012E CIL_00012E_0002 CGP 2:130417247-130444269
CIL_00006B CIL_00006B_0002 CGP 2:130424339-130554026

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380393 PTPRA-003 protein_coding Homo_sapiens 0 562
ENST00000380443 VPS16-006 protein_coding Homo_sapiens 0 817
ENST00000380445 VPS16-001 protein_coding Homo_sapiens 0 817
ENST00000380469 VPS16-003 protein_coding Homo_sapiens 0 817
ENST00000487461 VPS16-002 processed_transcript Homo_sapiens 0 350

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