C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing (lysine methyltransferase) 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125588 Setd8-010 ENSMUSG00000049327 10090 + 5:124451171-124460837 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000125588
Transcript ID Adipose Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000125588 24.279±6.24 10.093±0.00 16.257±1.25 16.289±0.52 38.807±0.00 9.771±0.00 16.825±0.00 27.112±0.00 4.144±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_000665 CIL_000665_0002 CGP 5:124368702-124462308
CIL_0003J0 CIL_0003J0_0002 CGP 5:124439930-124478366

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330479 SETD8-201 protein_coding Homo_sapiens 0 785
ENST00000402868 SETD8-001 protein_coding Homo_sapiens 0 785
ENST00000413684 AC027612.1-001 processed_pseudogene Homo_sapiens 0 669
ENST00000437502 SETD8-005 protein_coding Homo_sapiens 0 508
ENST00000437519 SETD8-002 nonsense_mediated_decay Homo_sapiens 0 785
ENST00000461103 SETD8-003 retained_intron Homo_sapiens 0 429
ENST00000623146 AL356585.3-201 pseudogene Homo_sapiens 0 761

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