C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127135 Ppargc1a-004 ENSMUSG00000029167 10090 - 5:51498141-51567724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000127135
Transcript ID Placenta
ENSMUST00000127135 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OU CIL_0002OU_0002 CGP 5:49959951-51567725
CIL_0007ZS CIL_0007ZS_0002 VISTA 5:51291179-51892760
CIL_00033R CIL_00033R_0003 CGP 5:51454249-52190519

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0014850 IDA response to muscle activity
GO:0022904 IDA respiratory electron transport chain
GO:0031490 IDA chromatin DNA binding
GO:0034599 IMP cellular response to oxidative stress
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264867 PPARGC1A-001 protein_coding Homo_sapiens 0 403
ENST00000503714 PPARGC1A-014 processed_transcript Homo_sapiens 0 261
ENST00000506055 PPARGC1A-007 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000507342 PPARGC1A-003 processed_transcript Homo_sapiens 0 335
ENST00000507380 PPARGC1A-004 protein_coding Homo_sapiens 0 263
ENST00000508380 PPARGC1A-011 processed_transcript Homo_sapiens 6e-33 145
ENST00000509642 PPARGC1A-005 processed_transcript Homo_sapiens 1e-32 145
ENST00000509702 PPARGC1A-006 processed_transcript Homo_sapiens 3e-32 145
ENST00000512169 PPARGC1A-012 processed_transcript Homo_sapiens 6e-33 145
ENST00000513205 PPARGC1A-008 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000514494 PPARGC1A-002 retained_intron Homo_sapiens 0 261
ENST00000515534 PPARGC1A-015 processed_transcript Homo_sapiens 0 263
ENST00000612355 PPARGC1A-201 protein_coding Homo_sapiens 0 403
ENST00000613098 PPARGC1A-202 protein_coding Homo_sapiens 1e-31 143
ENST00000617484 PPARGC1A-203 protein_coding Homo_sapiens 0 403

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