C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamyl-tRNA(Gln) amidotransferase, subunit B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127348 Pet112-001 ENSMUSG00000028085 10090 + 3:85574119-85655622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127348 1.739±0.49 0.886±0.17 1.301±0.01 0.914±0.15 3.342±1.47 0.912±0.28 4.009±0.87 4.960±0.60 1.416±0.48 0.947±0.39 3.564±0.51 1.889±0.49 0.880±0.10 0.891±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064N CIL_00064N_0002 CGP 3:84444035-85887516
CIL_0004PH CIL_0004PH_0002 CGP 3:84496093-85887516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0030956 IEA glutamyl-tRNA(Gln) amidotransferase complex
GO:0032543 IEA mitochondrial translation
GO:0050567 IEA glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0070681 IEA glutaminyl-tRNAGln biosynthesis via transamidation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263985 GATB-001 protein_coding Homo_sapiens 0 1834
ENST00000503160 GATB-005 nonsense_mediated_decay Homo_sapiens 0 1284
ENST00000505211 GATB-011 retained_intron Homo_sapiens 0 665
ENST00000508611 GATB-008 protein_coding Homo_sapiens 0 350
ENST00000511538 GATB-004 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000512306 GATB-003 protein_coding Homo_sapiens 0 1155
ENST00000513504 GATB-012 processed_transcript Homo_sapiens 0 501
ENST00000515490 GATB-010 retained_intron Homo_sapiens 0 531
ENST00000515564 GATB-006 retained_intron Homo_sapiens 0 808
ENST00000515812 GATB-002 protein_coding Homo_sapiens 0 992
ENST00000515884 GATB-009 nonsense_mediated_decay Homo_sapiens 0 473

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