C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor, alpha-induced protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504771 TNFAIP8-001 ENSG00000145779 9606 + 5:119354314-119399688 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000504771
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000504771 0.265±0.00 0.034±0.00 0.202±0.00 0.543±0.00 0.094±0.00 0.276±0.13 0.509±0.00 0.957±0.11 0.135±0.01 0.183±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LD CIL_0004LD_0001 CGP 5:119037772-119399688
CIL_0004LE CIL_0004LE_0001 CGP 5:119268692-119637199

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0043027 IMP cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0043154 IMP negative regulation of cysteine-type endopeptidase activity involved in apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148159 Tnfaip8-001 protein_coding Mus_musculus 0 702
ENSMUST00000126666 Tnfaip8-002 protein_coding Mus_musculus 0 625
ENSMUST00000148989 Tnfaip8-012 protein_coding Mus_musculus 0 621
ENSMUST00000128377 Tnfaip8-004 protein_coding Mus_musculus 0 525
ENSMUST00000179937 Tnfaip8-010 protein_coding Mus_musculus 0 359
ENSMUST00000153873 Tnfaip8-008 protein_coding Mus_musculus 0 342
ENSMUST00000134348 Tnfaip8-007 protein_coding Mus_musculus 0 226
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.000003 60
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.000003 60
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00004 57
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00004 57

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