C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129339 Eef1b2-001 ENSMUSG00000025967 10090 + 1:63176825-63180486 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLiverTestisENSMUST00000129339
Transcript ID Adrenal Brain Kidney Liver Testis
ENSMUST00000129339 32.863±4.80 42.869±12.59 30.095±0.00 28.039±19.39 13.183±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039O CIL_00039O_0002 CGP 1:62958418-63176833
CIL_0001R4 CIL_0001R4_0002 CGP 1:63143596-63180486
CIL_0001R5 CIL_0001R5_0002 CGP 1:63176825-63214543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 ISS translation elongation factor activity
GO:0005515 IPI protein binding
GO:0005853 ISS eukaryotic translation elongation factor 1 complex
GO:0006414 IEA translational elongation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236957 EEF1B2-001 protein_coding Homo_sapiens 0 880
ENST00000392221 EEF1B2-201 protein_coding Homo_sapiens 0 881
ENST00000392222 EEF1B2-003 protein_coding Homo_sapiens 0 963
ENST00000415904 EEF1B2-005 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000429769 EEF1B2-007 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000435123 EEF1B2-009 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000445505 EEF1B2-004 protein_coding Homo_sapiens 0 490
ENST00000445713 AC093106.7-001 processed_pseudogene Homo_sapiens 0 821
ENST00000447718 EEF1B2P3-001 processed_pseudogene Homo_sapiens 0 837
ENST00000455150 EEF1B2-010 nonsense_mediated_decay Homo_sapiens 0 669
ENST00000460760 EEF1B2-008 retained_intron Homo_sapiens 0 364
ENST00000479587 EEF1B2-006 retained_intron Homo_sapiens 0 291
ENST00000482103 EEF1B2-002 retained_intron Homo_sapiens 0 366
ENST00000519625 EEF1B2P2-001 processed_pseudogene Homo_sapiens 0 763

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