C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001R5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000114942-ENSG00000183671 CGP 9606 2:206159585-206218047
GeneTranscriptPositionBiotype
ENSG00000023228 (NDUFS1)
NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 		ENST00000233190 (NDUFS1-001) 206114817-206159603 protein_coding
ENST00000423725 (NDUFS1-005) 206123819-206159509 protein_coding
ENST00000432169 (NDUFS1-002) 206124101-206159425 protein_coding
ENST00000440274 (NDUFS1-003) 206123956-206159425 protein_coding
ENST00000449699 (NDUFS1-007) 206124101-206159194 protein_coding
ENST00000454195 (NDUFS1-008) 206147782-206159257 protein_coding
ENST00000455934 (NDUFS1-201) 206123111-206159194 protein_coding
ENST00000456284 (NDUFS1-009) 206147646-206159425 nonsense_mediated_decay
ENST00000457011 (NDUFS1-004) 206123945-206159425 protein_coding
ENST00000498520 (NDUFS1-010) 206127560-206132969 retained_intron
ENSG00000114942 (EEF1B2)
eukaryotic translation elongation factor 1 beta 2 		ENST00000236957 (EEF1B2-001) 206159585-206162928 protein_coding
ENST00000392221 (EEF1B2-201) 206159594-206162927 protein_coding
ENST00000392222 (EEF1B2-003) 206159605-206162928 protein_coding
ENST00000415904 (EEF1B2-005) 206159927-206161467 nonsense_mediated_decay
ENST00000429769 (EEF1B2-007) 206159636-206162801 nonsense_mediated_decay
ENST00000435123 (EEF1B2-009) 206159934-206161454 nonsense_mediated_decay
ENST00000445505 (EEF1B2-004) 206159607-206162077 protein_coding
ENST00000455150 (EEF1B2-010) 206159934-206162839 nonsense_mediated_decay
ENST00000460760 (EEF1B2-008) 206159638-206161190 retained_intron
ENST00000479587 (EEF1B2-006) 206159615-206161117 retained_intron
ENST00000482103 (EEF1B2-002) 206162228-206162928 retained_intron
ENSG00000183671 (GPR1)
G protein-coupled receptor 1 		ENST00000407325 (GPR1-001) 206175316-206218024 protein_coding
ENST00000411719 (GPR1-005) 206177027-206218047 protein_coding
ENST00000437420 (GPR1-002) 206176180-206217903 protein_coding
ENST00000439932 (GPR1-006) 206177000-206213744 protein_coding
ENST00000442134 (GPR1-008) 206176566-206213371 protein_coding
ENST00000447845 (GPR1-003) 206176836-206213438 protein_coding
ENST00000451790 (GPR1-007) 206176713-206213625 protein_coding
ENST00000458440 (GPR1-004) 206177191-206217900 protein_coding
ENST00000612892 (GPR1-201) 206175320-206218047 protein_coding
ENST00000621141 (GPR1-202) 206175320-206213628 protein_coding
ENSG00000207047 (SNORD51)
small nucleolar RNA, C/D box 51 		ENST00000384320 (SNORD51-201) 206161878-206161957 snoRNA
ENSG00000279220 (GPR1-AS)
GPR1 antisense RNA 		ENST00000623040 (GPR1-AS-001) 206203376-206266243 antisense
ENST00000624973 (GPR1-AS-002) 206259410-206263477 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0001R5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025967-ENSMUSG00000046856 CGP 10090 1:63176825-63214543
GeneTranscriptPositionBiotype
ENSMUSG00000025968 (Ndufs1)
NADH dehydrogenase (ubiquinone) Fe-S protein 1 		ENSMUST00000027111 (Ndufs1-001) 63143596-63176822 protein_coding
ENSMUST00000140612 (Ndufs1-002) 63158902-63176667 retained_intron
ENSMUST00000168099 (Ndufs1-006) 63143735-63176732 protein_coding
ENSMUST00000185412 (Ndufs1-008) 63169253-63176793 protein_coding
ENSMUST00000185732 (Ndufs1-010) 63165014-63176666 protein_coding
ENSMUST00000185827 (Ndufs1-005) 63156683-63176669 retained_intron
ENSMUST00000185847 (Ndufs1-011) 63150066-63176663 protein_coding
ENSMUST00000186569 (Ndufs1-004) 63150233-63152842 retained_intron
ENSMUST00000187756 (Ndufs1-012) 63143689-63147391 nonsense_mediated_decay
ENSMUST00000187835 (Ndufs1-013) 63143604-63147723 retained_intron
ENSMUST00000188370 (Ndufs1-007) 63163839-63176690 protein_coding
ENSMUST00000189664 (Ndufs1-009) 63170853-63176833 protein_coding
ENSMUST00000190095 (Ndufs1-003) 63143596-63144961 retained_intron
ENSMUSG00000046856 (Gpr1)
G protein-coupled receptor 1 		ENSMUST00000050536 (Gpr1-001) 63182691-63214543 protein_coding
ENSMUST00000187533 (Gpr1-002) 63208742-63214223 processed_transcript
ENSMUSG00000064602 (Snora41)
small nucleolar RNA, H/ACA box 41 		ENSMUST00000082668 (Snora41-201) 63179004-63179135 snoRNA
ENSMUSG00000086730 (Gm11607)
predicted gene 11607 		ENSMUST00000141027 (Gm11607-001) 63200313-63207614 antisense
ENSMUST00000189722 (Gm11607-002) 63200708-63207967 lincRNA
ENSMUSG00000094290 (Gm27512)
predicted gene, 27512 		ENSMUST00000175328 (Gm27512-201) 63198031-63198156 miRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001R5_0001ENSG00000023228ENST00000233190ENST00000423725ENST00000432169ENST00000440274ENST00000449699ENSG00000114942ENST00000236957ENST00000392221ENST00000445505ENST00000455150ENSG00000183671ENST00000407325ENST00000411719ENST00000437420ENST00000447845ENST00000451790ENST00000621141ENSG00000207047ENST00000384320ENSG00000279220ENST00000623040ENST00000624973CIL_0001R5_0002ENSMUSG00000025968ENSMUST00000027111ENSMUST00000168099ENSMUST00000185827ENSMUSG00000046856ENSMUST00000050536ENSMUST00000187533ENSMUSG00000064602ENSMUST00000082668ENSMUSG00000086730ENSMUST00000141027ENSMUST00000189722ENSMUSG00000094290ENSMUST00000175328
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000023228 ENST00000233190 3.859±0.00 4.701±0.00 4.454±0.00 8.072±1.40 3.724±1.59 4.804±0.20 14.133±6.61 5.933±1.52 5.573±0.89 2.525±0.00 6.367±2.01 4.204±0.59 N/A 2.702±1.01
ENST00000423725 N/A N/A N/A N/A N/A N/A N/A 13.948±0.00 N/A N/A N/A N/A N/A N/A
ENST00000432169 N/A N/A N/A N/A N/A N/A N/A 29.456±0.00 N/A N/A 22.379±0.00 N/A N/A 18.018±0.00
ENST00000440274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.957±0.00 8.214±0.00
ENST00000449699 16.203±0.00 N/A 18.920±0.00 32.836±5.61 18.158±4.17 25.301±0.00 76.908±15.31 28.008±0.00 25.903±0.00 11.384±0.00 41.273±8.09 23.667±0.00 N/A 7.652±0.00
ENST00000454195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000114942 ENST00000236957 N/A 73.819±0.00 N/A N/A 26.011±0.00 N/A N/A N/A N/A N/A N/A 279.631±260.07 256.875±166.06 15.560±0.00
ENST00000392221 94.114±0.00 145.340±0.00 33.368±0.00 79.972±18.04 73.099±0.14 153.265±50.43 N/A 82.920±4.98 109.612±17.57 102.018±30.66 104.663±8.55 120.521±7.68 30.163±0.00 107.477±0.00
ENST00000392222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445505 N/A N/A N/A N/A N/A N/A N/A N/A N/A 227.643±0.00 N/A N/A N/A N/A
ENST00000455150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 212.811±0.00 90.623±0.00 42.217±0.00
ENST00000460760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183671 ENST00000407325 N/A 0.835±0.00 N/A N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A 0.162±0.00 2.228±0.00 0.212±0.00
ENST00000411719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A N/A N/A
ENST00000437420 N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A 0.550±0.00 0.230±0.00 N/A 0.071±0.02 0.637±0.00 N/A
ENST00000439932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447845 N/A N/A N/A N/A N/A 0.157±0.07 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.142±0.00 1.229±0.00 N/A
ENST00000458440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621141 0.074±0.00 0.291±0.00 N/A 0.198±0.00 0.237±0.00 0.067±0.00 0.208±0.06 N/A 0.231±0.19 0.052±0.00 N/A 1.100±1.26 2.768±1.53 0.293±0.00
ENSG00000207047 ENST00000384320 0.649±0.00 1.652±0.00 N/A N/A 1.269±0.00 N/A 0.274±0.00 N/A N/A 2.493±0.00 N/A N/A N/A N/A
ENSG00000279220 ENST00000623040 0.021±0.00 0.092±0.00 N/A 0.039±0.00 0.047±0.03 0.056±0.00 0.008±0.00 0.017±0.00 0.003±0.00 N/A 0.030±0.00 0.039±0.01 0.404±0.11 0.170±0.04
ENST00000624973 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025968 ENSMUST00000027111 18.057±0.74 N/A 32.347±4.60 23.842±2.13 35.093±14.55 N/A 97.923±12.44 31.345±3.99 27.987±13.68 N/A 84.882±20.87 42.236±4.13 40.486±8.83 9.548±1.24
ENSMUST00000140612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168099 19.494±0.40 N/A N/A 43.345±0.00 22.956±2.78 N/A 73.604±6.81 35.996±3.81 14.189±1.61 N/A 48.105±13.09 N/A N/A 9.723±2.01
ENSMUST00000185412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185827 N/A N/A N/A 36.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.396±0.00
ENSMUST00000185847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046856 ENSMUST00000050536 1.128±0.38 0.136±0.05 1.321±0.02 0.093±0.04 1.935±1.02 0.042±0.01 0.188±0.07 0.030±0.01 0.045±0.02 0.077±0.01 0.216±0.09 1.199±0.47 10.069±6.50 0.072±0.05
ENSMUST00000187533 N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00
ENSMUSG00000064602 ENSMUST00000082668 N/A N/A 18.043±0.00 15.253±1.77 N/A N/A N/A N/A 16.624±3.99 N/A N/A 38.408±5.62 39.811±34.79 N/A
ENSMUSG00000086730 ENSMUST00000141027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.17 0.269±0.15
ENSMUST00000189722 N/A N/A 0.030±0.01 0.047±0.03 N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.04 0.126±0.05
ENSMUSG00000094290 ENSMUST00000175328 1084.704±311.50 1327.150±0.00 98.039±0.02 68.407±34.63 1975.590±852.53 1833.135±596.84 1410.985±283.42 1165.909±368.01 128.171±230.97 1015.821±504.15 5.833±0.82 627.812±1042.69 21.087±10.80 924.408±546.96

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