C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin IX
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130414 Syt9-002 ENSMUSG00000062542 10090 + 7:107370790-107548653 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000130414
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000130414 0.457±0.21 0.053±0.00 0.195±0.09 0.008±0.00 0.216±0.08 0.048±0.00 0.143±0.10 0.062±0.02 0.259±0.05 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HA CIL_0007HA_0002 CGP 7:107209445-107548656
CIL_0001FU CIL_0001FU_0003 CGP 7:107370728-107591094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0031045 IDA dense core granule
GO:0050796 IEA regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318881 SYT9-001 protein_coding Homo_sapiens 0 833
ENST00000524820 SYT9-003 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000532592 SYT9-002 nonsense_mediated_decay Homo_sapiens 0 1498

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