C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130560 Apod-001 ENSMUSG00000022548 10090 - 16:31296192-31314808 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130560 1.054±0.24 0.507±0.25 3.190±0.04 2.296±0.01 7.071±0.93 0.349±0.19 0.693±0.09 0.253±0.15 0.015±0.00 0.892±0.17 2.522±0.47 0.346±0.14 0.042±0.00 0.250±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CD CIL_0006CD_0002 CGP 16:31251537-31314808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000302 IMP response to reactive oxygen species
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005615 ISS extracellular space
GO:0005622 IDA intracellular
GO:0005783 ISS endoplasmic reticulum
GO:0006006 ISS glucose metabolic process
GO:0006629 ISS lipid metabolic process
GO:0006810 IEA transport
GO:0007420 ISS brain development
GO:0007568 ISS aging
GO:0010642 ISS negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 ISS peripheral nervous system axon regeneration
GO:0015485 ISS cholesterol binding
GO:0022626 ISS cytosolic ribosome
GO:0030425 ISS dendrite
GO:0042246 ISS tissue regeneration
GO:0042308 ISS negative regulation of protein import into nucleus
GO:0042493 ISS response to drug
GO:0043025 ISS neuronal cell body
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048662 ISS negative regulation of smooth muscle cell proliferation
GO:0048678 ISS response to axon injury
GO:0051895 ISS negative regulation of focal adhesion assembly
GO:0060588 IMP negative regulation of lipoprotein lipid oxidation
GO:0070062 IEA extracellular vesicular exosome
GO:0071638 ISS negative regulation of monocyte chemotactic protein-1 production
GO:1900016 ISS negative regulation of cytokine production involved in inflammatory response
GO:2000098 ISS negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 ISS negative regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343267 APOD-001 protein_coding Homo_sapiens 0 420
ENST00000421243 APOD-005 protein_coding Homo_sapiens 0 420
ENST00000453131 APOD-004 protein_coding Homo_sapiens 0 357
ENST00000458447 APOD-003 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000463719 APOD-002 retained_intron Homo_sapiens 0 255

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