C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate decarboxylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130604 Gad1-002 ENSMUSG00000070880 10090 + 2:70562042-70587136 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyOvaryTestisENSMUST00000130604
Transcript ID Adrenal Colon Kidney Ovary Testis
ENSMUST00000130604 0.169±0.02 0.080±0.00 0.182±0.00 0.080±0.00 0.052±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SB CIL_0003SB_0003 CGP 2:70508819-70602014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005938 IDA cell cortex
GO:0016831 IEA carboxy-lyase activity
GO:0019752 IEA carboxylic acid metabolic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0030424 IDA axon
GO:0043679 IDA axon terminus
GO:0044306 IDA neuron projection terminus
GO:0045202 IDA synapse
GO:0048786 IDA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344257 GAD1-002 protein_coding Homo_sapiens 0 1044
ENST00000358196 GAD1-001 protein_coding Homo_sapiens 0 1042
ENST00000375272 GAD1-201 protein_coding Homo_sapiens 0 1168
ENST00000414527 GAD1-013 nonsense_mediated_decay Homo_sapiens 0 856
ENST00000429023 GAD1-004 processed_transcript Homo_sapiens 0 1129
ENST00000445006 GAD1-008 protein_coding Homo_sapiens 0 329
ENST00000454603 GAD1-007 protein_coding Homo_sapiens 0 337
ENST00000455008 GAD1-009 protein_coding Homo_sapiens 0 449
ENST00000456864 GAD1-010 protein_coding Homo_sapiens 0 466
ENST00000462739 GAD1-014 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000485013 GAD1-011 retained_intron Homo_sapiens 0 285
ENST00000486850 GAD1-015 protein_coding Homo_sapiens 0 298
ENST00000493270 GAD1-012 retained_intron Homo_sapiens 0 412
ENST00000493875 GAD1-003 nonsense_mediated_decay Homo_sapiens 0 850

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