C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor Y, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551727 NFYB-003 ENSG00000120837 9606 - 12:104119355-104138017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000551727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000551727 6.385±0.00 7.784±0.00 2.282±0.00 8.765±1.84 5.954±1.60 10.159±7.60 6.565±4.31 6.327±3.72 4.537±1.21 7.143±1.85 5.827±0.00 14.836±11.42 12.190±10.17 29.488±11.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SA CIL_0002SA_0001 CGP 12:104064457-104138289
CIL_0004AC CIL_0004AC_0001 CGP 12:104117077-104350305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0016602 IDA CCAAT-binding factor complex
GO:0043565 IEA sequence-specific DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046982 IEA protein heterodimerization activity
GO:0070491 IPI repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130911 Nfyb-001 protein_coding Mus_musculus 0 1227
ENSMUST00000143749 Nfyb-007 retained_intron Mus_musculus 0 547
ENSMUST00000142523 Nfyb-002 protein_coding Mus_musculus 0 444
ENSMUST00000145561 Nfyb-004 retained_intron Mus_musculus 2.8026e-45 187
ENSMUST00000128397 Nfyb-006 retained_intron Mus_musculus 6e-32 143

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