C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor Y, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240055 NFYB-001 ENSG00000120837 9606 - 12:104117077-104138289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240055
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240055 2.593±0.00 0.427±0.00 4.729±0.00 1.693±0.93 4.074±2.69 1.075±0.25 3.662±0.00 1.286±0.32 0.876±0.23 1.960±0.00 3.138±0.85 1.738±0.31 4.451±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SA CIL_0002SA_0001 CGP 12:104064457-104138289
CIL_0004AC CIL_0004AC_0001 CGP 12:104117077-104350305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0016602 IDA CCAAT-binding factor complex
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0070491 IPI repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130911 Nfyb-001 protein_coding Mus_musculus 0 1687
ENSMUST00000143749 Nfyb-007 retained_intron Mus_musculus 0 728
ENSMUST00000142523 Nfyb-002 protein_coding Mus_musculus 0 424
ENSMUST00000145561 Nfyb-004 retained_intron Mus_musculus 5.60519e-45 187
ENSMUST00000128397 Nfyb-006 retained_intron Mus_musculus 1e-31 143

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