C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphomannomutase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131385 Pmm2-005 ENSMUSG00000022711 10090 + 16:8648592-8656742 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000131385
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000131385 21.528±0.00 51.688±0.00 79.301±16.50 30.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EU CIL_0000EU_0002 CGP 16:8513429-8637712
CIL_0000ET CIL_0000ET_0002 CGP 16:8633884-8657531
CIL_0000EW CIL_0000EW_0002 CGP 16:8637674-8672153

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268261 PMM2-001 protein_coding Homo_sapiens 0 459
ENST00000562025 PMM2-017 processed_transcript Homo_sapiens 6e-23 111
ENST00000562318 PMM2-003 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000564069 PMM2-014 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000565221 PMM2-006 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000565896 PMM2-012 nonsense_mediated_decay Homo_sapiens 2.8026e-45 185
ENST00000566540 PMM2-004 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000566604 PMM2-002 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000566983 PMM2-018 protein_coding Homo_sapiens 0 459
ENST00000567697 PMM2-007 retained_intron Homo_sapiens 0 464
ENST00000569958 PMM2-015 protein_coding Homo_sapiens 0 303
ENST00000570076 PMM2-005 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000570134 PMM2-016 nonsense_mediated_decay Homo_sapiens 0 204

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