C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131567 Itgb2l-003 ENSMUSG00000000157 10090 - 16:96422292-96443614 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLungMuscleOvaryPlacentaTestisENSMUST00000131567
Transcript ID Adipose Bladder Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENSMUST00000131567 0.026±0.00 0.083±0.00 0.028±0.00 0.086±0.03 0.238±0.00 0.012±0.00 0.017±0.00 0.125±0.07 0.017±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GD CIL_0003GD_0002 CGP 16:96235801-96525580

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0006954 IEA inflammatory response
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302347 ITGB2-201 protein_coding Homo_sapiens 0 628
ENST00000320216 ITGB2-010 protein_coding Homo_sapiens 1e-37 161
ENST00000355153 ITGB2-001 protein_coding Homo_sapiens 0 628
ENST00000397850 ITGB2-002 protein_coding Homo_sapiens 0 628
ENST00000397852 ITGB2-005 protein_coding Homo_sapiens 0 628
ENST00000397854 ITGB2-003 protein_coding Homo_sapiens 0 628
ENST00000397857 ITGB2-004 protein_coding Homo_sapiens 0 628
ENST00000475170 ITGB2-006 retained_intron Homo_sapiens 0 425
ENST00000498666 ITGB2-007 retained_intron Homo_sapiens 0 368
ENST00000517563 ITGB2-015 protein_coding Homo_sapiens 7e-27 124
ENST00000517819 ITGB2-016 protein_coding Homo_sapiens 9e-16 88
ENST00000522688 ITGB2-017 protein_coding Homo_sapiens 3e-26 122
ENST00000522931 ITGB2-022 protein_coding Homo_sapiens 4e-34 148
ENST00000523323 ITGB2-013 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000523663 ITGB2-024 protein_coding Homo_sapiens 5e-34 148
ENST00000524251 ITGB2-021 protein_coding Homo_sapiens 1e-25 121
ENST00000610622 ITGB2-202 protein_coding Homo_sapiens 0 621

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