C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain and reproductive organ-expressed protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131995 Bre-007 ENSMUSG00000052139 10090 + 5:31698050-32084739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartMuscleOvaryENSMUST00000131995
Transcript ID Heart Muscle Ovary
ENSMUST00000131995 5.260±0.00 6.896±0.92 18.797±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013J CIL_00013J_0002 CGP 5:31526995-31701972
CIL_00013K CIL_00013K_0002 CGP 5:31596935-31701972
CIL_0003JP CIL_0003JP_0003 CGP 5:31624439-32084962
CIL_0003JO CIL_0003JO_0003 CGP 5:31697684-32157831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000152 ISS nuclear ubiquitin ligase complex
GO:0005164 IDA tumor necrosis factor receptor binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006302 ISS double-strand break repair
GO:0006915 IEA apoptotic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0010212 ISS response to ionizing radiation
GO:0016568 IEA chromatin modification
GO:0031572 ISS G2 DNA damage checkpoint
GO:0031593 ISS polyubiquitin binding
GO:0045739 ISS positive regulation of DNA repair
GO:0070531 ISS BRCA1-A complex
GO:0070552 ISS BRISC complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342045 BRE-004 protein_coding Homo_sapiens 0 1430
ENST00000344773 BRE-001 protein_coding Homo_sapiens 0 1240
ENST00000361704 BRE-005 protein_coding Homo_sapiens 0 1236
ENST00000379624 BRE-003 protein_coding Homo_sapiens 0 1430
ENST00000379629 BRE-009 protein_coding Homo_sapiens 0 660
ENST00000379632 BRE-002 protein_coding Homo_sapiens 0 1236
ENST00000603461 BRE-010 processed_transcript Homo_sapiens 0 396
ENST00000604932 BRE-011 non_stop_decay Homo_sapiens 0 396

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